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Pipeline for large-scale microdroplet bisulfite PCR-based sequencing allows the tracking of hepitype evolution in tumors.
Herrmann A, Haake A, Ammerpohl O, Martin-Guerrero I, Szafranski K, Stemshorn K, Nothnagel M, Kotsopoulos SK, Richter J, Warner J, Olson J, Link DR, Schreiber S, Krawczak M, Platzer M, Nürnberg P, Siebert R, Hampe J. Herrmann A, et al. Among authors: siebert r. PLoS One. 2011;6(7):e21332. doi: 10.1371/journal.pone.0021332. Epub 2011 Jul 5. PLoS One. 2011. PMID: 21750708 Free PMC article.
Technology-specific error signatures in the 1000 Genomes Project data.
Nothnagel M, Herrmann A, Wolf A, Schreiber S, Platzer M, Siebert R, Krawczak M, Hampe J. Nothnagel M, et al. Among authors: siebert r. Hum Genet. 2011 Oct;130(4):505-16. doi: 10.1007/s00439-011-0971-3. Epub 2011 Feb 23. Hum Genet. 2011. PMID: 21344269
Hunting for the 5th base: Techniques for analyzing DNA methylation.
Ammerpohl O, Martín-Subero JI, Richter J, Vater I, Siebert R. Ammerpohl O, et al. Among authors: siebert r. Biochim Biophys Acta. 2009 Sep;1790(9):847-62. doi: 10.1016/j.bbagen.2009.02.001. Epub 2009 Feb 9. Biochim Biophys Acta. 2009. PMID: 19364478 Review.
Statistical inference of allelic imbalance from transcriptome data.
Nothnagel M, Wolf A, Herrmann A, Szafranski K, Vater I, Brosch M, Huse K, Siebert R, Platzer M, Hampe J, Krawczak M. Nothnagel M, et al. Among authors: siebert r. Hum Mutat. 2011 Jan;32(1):98-106. doi: 10.1002/humu.21396. Hum Mutat. 2011. PMID: 21120951
Quantitative DNA Methylation Profiling in Cancer.
Ammerpohl O, Haake A, Kolarova J, Siebert R. Ammerpohl O, et al. Among authors: siebert r. Methods Mol Biol. 2016;1381:75-92. doi: 10.1007/978-1-4939-3204-7_5. Methods Mol Biol. 2016. PMID: 26667456
A comprehensive microarray-based DNA methylation study of 367 hematological neoplasms.
Martin-Subero JI, Ammerpohl O, Bibikova M, Wickham-Garcia E, Agirre X, Alvarez S, Brüggemann M, Bug S, Calasanz MJ, Deckert M, Dreyling M, Du MQ, Dürig J, Dyer MJ, Fan JB, Gesk S, Hansmann ML, Harder L, Hartmann S, Klapper W, Küppers R, Montesinos-Rongen M, Nagel I, Pott C, Richter J, Román-Gómez J, Seifert M, Stein H, Suela J, Trümper L, Vater I, Prosper F, Haferlach C, Cruz Cigudosa J, Siebert R. Martin-Subero JI, et al. Among authors: siebert r. PLoS One. 2009 Sep 11;4(9):e6986. doi: 10.1371/journal.pone.0006986. PLoS One. 2009. PMID: 19750229 Free PMC article.
Distinct DNA methylation patterns in cirrhotic liver and hepatocellular carcinoma.
Ammerpohl O, Pratschke J, Schafmayer C, Haake A, Faber W, von Kampen O, Brosch M, Sipos B, von Schönfels W, Balschun K, Röcken C, Arlt A, Schniewind B, Grauholm J, Kalthoff H, Neuhaus P, Stickel F, Schreiber S, Becker T, Siebert R, Hampe J. Ammerpohl O, et al. Among authors: siebert r. Int J Cancer. 2012 Mar 15;130(6):1319-28. doi: 10.1002/ijc.26136. Epub 2011 Jul 21. Int J Cancer. 2012. PMID: 21500188 Free article.
DNA methylation analysis in nonalcoholic fatty liver disease suggests distinct disease-specific and remodeling signatures after bariatric surgery.
Ahrens M, Ammerpohl O, von Schönfels W, Kolarova J, Bens S, Itzel T, Teufel A, Herrmann A, Brosch M, Hinrichsen H, Erhart W, Egberts J, Sipos B, Schreiber S, Häsler R, Stickel F, Becker T, Krawczak M, Röcken C, Siebert R, Schafmayer C, Hampe J. Ahrens M, et al. Among authors: siebert r. Cell Metab. 2013 Aug 6;18(2):296-302. doi: 10.1016/j.cmet.2013.07.004. Cell Metab. 2013. PMID: 23931760 Free article.
745 results