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XGAP: a uniform and extensible data model and software platform for genotype and phenotype experiments.
Swertz MA, Velde KJ, Tesson BM, Scheltema RA, Arends D, Vera G, Alberts R, Dijkstra M, Schofield P, Schughart K, Hancock JM, Smedley D, Wolstencroft K, Goble C, de Brock EO, Jones AR, Parkinson HE; Coordination of Mouse Informatics Resources (CASIMIR); Genotype-To-Phenotype (GEN2PHEN) Consortiums; Jansen RC. Swertz MA, et al. Among authors: alberts r. Genome Biol. 2010;11(3):R27. doi: 10.1186/gb-2010-11-3-r27. Epub 2010 Mar 9. Genome Biol. 2010. PMID: 20214801 Free PMC article.
Combining microarrays and genetic analysis.
Alberts R, Fu J, Swertz MA, Lubbers LA, Albers CJ, Jansen RC. Alberts R, et al. Brief Bioinform. 2005 Jun;6(2):135-45. doi: 10.1093/bib/6.2.135. Brief Bioinform. 2005. PMID: 15975223 Free article.
MOLGENIS research: advanced bioinformatics data software for non-bioinformaticians.
van der Velde KJ, Imhann F, Charbon B, Pang C, van Enckevort D, Slofstra M, Barbieri R, Alberts R, Hendriksen D, Kelpin F, de Haan M, de Boer T, Haakma S, Stroomberg C, Scholtens S, van de Geijn GJ, Festen EAM, Weersma RK, Swertz MA. van der Velde KJ, et al. Among authors: alberts r. Bioinformatics. 2019 Mar 15;35(6):1076-1078. doi: 10.1093/bioinformatics/bty742. Bioinformatics. 2019. PMID: 30165396 Free PMC article.
Sequence polymorphisms cause many false cis eQTLs.
Alberts R, Terpstra P, Li Y, Breitling R, Nap JP, Jansen RC. Alberts R, et al. PLoS One. 2007 Jul 18;2(7):e622. doi: 10.1371/journal.pone.0000622. PLoS One. 2007. PMID: 17637838 Free PMC article.
Data-driven assessment of eQTL mapping methods.
Michaelson JJ, Alberts R, Schughart K, Beyer A. Michaelson JJ, et al. Among authors: alberts r. BMC Genomics. 2010 Sep 17;11:502. doi: 10.1186/1471-2164-11-502. BMC Genomics. 2010. PMID: 20849587 Free PMC article.
48 results