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CTdatabase: a knowledge-base of high-throughput and curated data on cancer-testis antigens.
Almeida LG, Sakabe NJ, deOliveira AR, Silva MC, Mundstein AS, Cohen T, Chen YT, Chua R, Gurung S, Gnjatic S, Jungbluth AA, Caballero OL, Bairoch A, Kiesler E, White SL, Simpson AJ, Old LJ, Camargo AA, Vasconcelos AT. Almeida LG, et al. Among authors: vasconcelos at. Nucleic Acids Res. 2009 Jan;37(Database issue):D816-9. doi: 10.1093/nar/gkn673. Epub 2008 Oct 5. Nucleic Acids Res. 2009. PMID: 18838390 Free PMC article.
Systematic detection of putative tumor suppressor genes through the combined use of exome and transcriptome sequencing.
Zhao Q, Kirkness EF, Caballero OL, Galante PA, Parmigiani RB, Edsall L, Kuan S, Ye Z, Levy S, Vasconcelos AT, Ren B, de Souza SJ, Camargo AA, Simpson AJ, Strausberg RL. Zhao Q, et al. Among authors: vasconcelos at. Genome Biol. 2010;11(11):R114. doi: 10.1186/gb-2010-11-11-r114. Epub 2010 Nov 25. Genome Biol. 2010. PMID: 21108794 Free PMC article.
Distinct patterns of somatic alterations in a lymphoblastoid and a tumor genome derived from the same individual.
Galante PA, Parmigiani RB, Zhao Q, Caballero OL, de Souza JE, Navarro FC, Gerber AL, Nicolás MF, Salim AC, Silva AP, Edsall L, Devalle S, Almeida LG, Ye Z, Kuan S, Pinheiro DG, Tojal I, Pedigoni RG, de Sousa RG, Oliveira TY, de Paula MG, Ohno-Machado L, Kirkness EF, Levy S, da Silva WA Jr, Vasconcelos AT, Ren B, Zago MA, Strausberg RL, Simpson AJ, de Souza SJ, Camargo AA. Galante PA, et al. Among authors: vasconcelos at. Nucleic Acids Res. 2011 Aug;39(14):6056-68. doi: 10.1093/nar/gkr221. Epub 2011 Apr 14. Nucleic Acids Res. 2011. PMID: 21493686 Free PMC article.
Swine and poultry pathogens: the complete genome sequences of two strains of Mycoplasma hyopneumoniae and a strain of Mycoplasma synoviae.
Vasconcelos AT, Ferreira HB, Bizarro CV, Bonatto SL, Carvalho MO, Pinto PM, Almeida DF, Almeida LG, Almeida R, Alves-Filho L, Assunção EN, Azevedo VA, Bogo MR, Brigido MM, Brocchi M, Burity HA, Camargo AA, Camargo SS, Carepo MS, Carraro DM, de Mattos Cascardo JC, Castro LA, Cavalcanti G, Chemale G, Collevatti RG, Cunha CW, Dallagiovanna B, Dambrós BP, Dellagostin OA, Falcão C, Fantinatti-Garboggini F, Felipe MS, Fiorentin L, Franco GR, Freitas NS, Frías D, Grangeiro TB, Grisard EC, Guimarães CT, Hungria M, Jardim SN, Krieger MA, Laurino JP, Lima LF, Lopes MI, Loreto EL, Madeira HM, Manfio GP, Maranhão AQ, Martinkovics CT, Medeiros SR, Moreira MA, Neiva M, Ramalho-Neto CE, Nicolás MF, Oliveira SC, Paixão RF, Pedrosa FO, Pena SD, Pereira M, Pereira-Ferrari L, Piffer I, Pinto LS, Potrich DP, Salim AC, Santos FR, Schmitt R, Schneider MP, Schrank A, Schrank IS, Schuck AF, Seuanez HN, Silva DW, Silva R, Silva SC, Soares CM, Souza KR, Souza RC, Staats CC, Steffens MB, Teixeira SM, Urmenyi TP, Vainstein MH, Zuccherato LW, Simpson AJ, Zaha A. Vasconcelos AT, et al. J Bacteriol. 2005 Aug;187(16):5568-77. doi: 10.1128/JB.187.16.5568-5577.2005. J Bacteriol. 2005. PMID: 16077101 Free PMC article.
A System for Automated Bacterial (genome) Integrated Annotation--SABIA.
Almeida LG, Paixão R, Souza RC, Costa GC, Barrientos FJ, Santos MT, Almeida DF, Vasconcelos AT. Almeida LG, et al. Among authors: vasconcelos at. Bioinformatics. 2004 Nov 1;20(16):2832-3. doi: 10.1093/bioinformatics/bth273. Epub 2004 Apr 15. Bioinformatics. 2004. PMID: 15087310
AtlasT4SS: a curated database for type IV secretion systems.
Souza RC, del Rosario Quispe Saji G, Costa MO, Netto DS, Lima NC, Klein CC, Vasconcelos AT, Nicolás MF. Souza RC, et al. Among authors: vasconcelos at. BMC Microbiol. 2012 Aug 9;12:172. doi: 10.1186/1471-2180-12-172. BMC Microbiol. 2012. PMID: 22876890 Free PMC article.
Evolution and epidemic spread of SARS-CoV-2 in Brazil.
Candido DS, Claro IM, de Jesus JG, Souza WM, Moreira FRR, Dellicour S, Mellan TA, du Plessis L, Pereira RHM, Sales FCS, Manuli ER, Thézé J, Almeida L, Menezes MT, Voloch CM, Fumagalli MJ, Coletti TM, da Silva CAM, Ramundo MS, Amorim MR, Hoeltgebaum HH, Mishra S, Gill MS, Carvalho LM, Buss LF, Prete CA Jr, Ashworth J, Nakaya HI, Peixoto PS, Brady OJ, Nicholls SM, Tanuri A, Rossi ÁD, Braga CKV, Gerber AL, de C Guimarães AP, Gaburo N Jr, Alencar CS, Ferreira ACS, Lima CX, Levi JE, Granato C, Ferreira GM, Francisco RS Jr, Granja F, Garcia MT, Moretti ML, Perroud MW Jr, Castiñeiras TMPP, Lazari CS, Hill SC, de Souza Santos AA, Simeoni CL, Forato J, Sposito AC, Schreiber AZ, Santos MNN, de Sá CZ, Souza RP, Resende-Moreira LC, Teixeira MM, Hubner J, Leme PAF, Moreira RG, Nogueira ML; Brazil-UK Centre for Arbovirus Discovery, Diagnosis, Genomics and Epidemiology (CADDE) Genomic Network; Ferguson NM, Costa SF, Proenca-Modena JL, Vasconcelos ATR, Bhatt S, Lemey P, Wu CH, Rambaut A, Loman NJ, Aguiar RS, Pybus OG, Sabino EC, Faria NR. Candido DS, et al. Science. 2020 Sep 4;369(6508):1255-1260. doi: 10.1126/science.abd2161. Epub 2020 Jul 23. Science. 2020. PMID: 32703910 Free PMC article.
Identification of non-coding RNAs in environmental vibrios.
Silveira ACG, Robertson KL, Lin B, Wang Z, Vora GJ, Vasconcelos ATR, Thompson FL. Silveira ACG, et al. Microbiology (Reading). 2010 Aug;156(Pt 8):2452-2458. doi: 10.1099/mic.0.039149-0. Epub 2010 May 6. Microbiology (Reading). 2010. PMID: 20447992 Free article.
222 results