Orengo CA - Search Results

1

ISPIDER Central: an integrated database web-server for proteomics.

Siepen JA, Belhajjame K, Selley JN, Embury SM, Paton NW, Goble CA, Oliver SG, Stevens R, Zamboulis L, Martin N, Poulovassillis A, Jones P, Côté R, Hermjakob H, Pentony MM, Jones DT, Orengo CA, Hubbard SJ. Siepen JA, et al. Among authors: orengo ca. Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W485-90. doi: 10.1093/nar/gkn196. Epub 2008 Apr 25. Nucleic Acids Res. 2008. PMID: 18440977 Free PMC article.

2

Protein superfamilies and domain superfolds.

Orengo CA, Jones DT, Thornton JM. Orengo CA, et al. Nature. 1994 Dec 15;372(6507):631-4. doi: 10.1038/372631a0. Nature. 1994. PMID: 7990952

3

CATH--a hierarchic classification of protein domain structures.

Orengo CA, Michie AD, Jones S, Jones DT, Swindells MB, Thornton JM. Orengo CA, et al. Structure. 1997 Aug 15;5(8):1093-108. doi: 10.1016/s0969-2126(97)00260-8. Structure. 1997. PMID: 9309224 Free article.

4

Classifying a protein in the CATH database of domain structures.

Orengo CA, Martin AM, Hutchinson G, Jones S, Jones DT, Michie AD, Swindells MB, Thornton JM. Orengo CA, et al. Acta Crystallogr D Biol Crystallogr. 1998 Nov 1;54(Pt 6 Pt 1):1155-67. doi: 10.1107/s0907444998007501. Acta Crystallogr D Biol Crystallogr. 1998. PMID: 10089492

5

VIDA: a virus database system for the organization of animal virus genome open reading frames.

Albà MM, Lee D, Pearl FM, Shepherd AJ, Martin N, Orengo CA, Kellam P. Albà MM, et al. Among authors: orengo ca. Nucleic Acids Res. 2001 Jan 1;29(1):133-6. doi: 10.1093/nar/29.1.133. Nucleic Acids Res. 2001. PMID: 11125070 Free PMC article.

6

A rapid classification protocol for the CATH Domain Database to support structural genomics.

Pearl FM, Martin N, Bray JE, Buchan DW, Harrison AP, Lee D, Reeves GA, Shepherd AJ, Sillitoe I, Todd AE, Thornton JM, Orengo CA. Pearl FM, et al. Among authors: orengo ca. Nucleic Acids Res. 2001 Jan 1;29(1):223-7. doi: 10.1093/nar/29.1.223. Nucleic Acids Res. 2001. PMID: 11125098 Free PMC article.

7

PFDB: a generic protein family database integrating the CATH domain structure database with sequence based protein family resources.

Shepherd AJ, Martin NJ, Johnson RG, Kellam P, Orengo CA. Shepherd AJ, et al. Among authors: orengo ca. Bioinformatics. 2002 Dec;18(12):1666-72. doi: 10.1093/bioinformatics/18.12.1666. Bioinformatics. 2002. PMID: 12490452

8

The CATH database: an extended protein family resource for structural and functional genomics.

Pearl FM, Bennett CF, Bray JE, Harrison AP, Martin N, Shepherd A, Sillitoe I, Thornton J, Orengo CA. Pearl FM, et al. Among authors: orengo ca. Nucleic Acids Res. 2003 Jan 1;31(1):452-5. doi: 10.1093/nar/gkg062. Nucleic Acids Res. 2003. PMID: 12520050 Free PMC article.

9

FFPred: an integrated feature-based function prediction server for vertebrate proteomes.

Lobley AE, Nugent T, Orengo CA, Jones DT. Lobley AE, et al. Among authors: orengo ca. Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W297-302. doi: 10.1093/nar/gkn193. Epub 2008 May 7. Nucleic Acids Res. 2008. PMID: 18463141 Free PMC article.

10

Extending CATH: increasing coverage of the protein structure universe and linking structure with function.

Cuff AL, Sillitoe I, Lewis T, Clegg AB, Rentzsch R, Furnham N, Pellegrini-Calace M, Jones D, Thornton J, Orengo CA. Cuff AL, et al. Among authors: orengo ca. Nucleic Acids Res. 2011 Jan;39(Database issue):D420-6. doi: 10.1093/nar/gkq1001. Epub 2010 Nov 19. Nucleic Acids Res. 2011. PMID: 21097779 Free PMC article.

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