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Revisiting the protein-coding gene catalog of Drosophila melanogaster using 12 fly genomes.
Lin MF, Carlson JW, Crosby MA, Matthews BB, Yu C, Park S, Wan KH, Schroeder AJ, Gramates LS, St Pierre SE, Roark M, Wiley KL Jr, Kulathinal RJ, Zhang P, Myrick KV, Antone JV, Celniker SE, Gelbart WM, Kellis M. Lin MF, et al. Among authors: matthews bb. Genome Res. 2007 Dec;17(12):1823-36. doi: 10.1101/gr.6679507. Epub 2007 Nov 7. Genome Res. 2007. PMID: 17989253 Free PMC article.
Annotation of the Drosophila melanogaster euchromatic genome: a systematic review.
Misra S, Crosby MA, Mungall CJ, Matthews BB, Campbell KS, Hradecky P, Huang Y, Kaminker JS, Millburn GH, Prochnik SE, Smith CD, Tupy JL, Whitfied EJ, Bayraktaroglu L, Berman BP, Bettencourt BR, Celniker SE, de Grey AD, Drysdale RA, Harris NL, Richter J, Russo S, Schroeder AJ, Shu SQ, Stapleton M, Yamada C, Ashburner M, Gelbart WM, Rubin GM, Lewis SE. Misra S, et al. Among authors: matthews bb. Genome Biol. 2002;3(12):RESEARCH0083. doi: 10.1186/gb-2002-3-12-research0083. Epub 2002 Dec 31. Genome Biol. 2002. PMID: 12537572 Free PMC article. Review.
Gene Model Annotations for Drosophila melanogaster: The Rule-Benders.
Crosby MA, Gramates LS, Dos Santos G, Matthews BB, St Pierre SE, Zhou P, Schroeder AJ, Falls K, Emmert DB, Russo SM, Gelbart WM; FlyBase Consortium. Crosby MA, et al. Among authors: matthews bb. G3 (Bethesda). 2015 Jun 24;5(8):1737-49. doi: 10.1534/g3.115.018937. G3 (Bethesda). 2015. PMID: 26109356 Free PMC article.
Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data.
Matthews BB, Dos Santos G, Crosby MA, Emmert DB, St Pierre SE, Gramates LS, Zhou P, Schroeder AJ, Falls K, Strelets V, Russo SM, Gelbart WM; FlyBase Consortium. Matthews BB, et al. G3 (Bethesda). 2015 Jun 24;5(8):1721-36. doi: 10.1534/g3.115.018929. G3 (Bethesda). 2015. PMID: 26109357 Free PMC article.
FlyBase at 25: looking to the future.
Gramates LS, Marygold SJ, Santos GD, Urbano JM, Antonazzo G, Matthews BB, Rey AJ, Tabone CJ, Crosby MA, Emmert DB, Falls K, Goodman JL, Hu Y, Ponting L, Schroeder AJ, Strelets VB, Thurmond J, Zhou P; the FlyBase Consortium. Gramates LS, et al. Among authors: matthews bb. Nucleic Acids Res. 2017 Jan 4;45(D1):D663-D671. doi: 10.1093/nar/gkw1016. Epub 2016 Oct 30. Nucleic Acids Res. 2017. PMID: 27799470 Free PMC article.
Exploring FlyBase Data Using QuickSearch.
Marygold SJ, Antonazzo G, Attrill H, Costa M, Crosby MA, Dos Santos G, Goodman JL, Gramates LS, Matthews BB, Rey AJ, Thurmond J; FlyBase Consortium. Marygold SJ, et al. Among authors: matthews bb. Curr Protoc Bioinformatics. 2016 Dec 8;56:1.31.1-1.31.23. doi: 10.1002/cpbi.19. Curr Protoc Bioinformatics. 2016. PMID: 27930807 Free PMC article.
FlyBase 2.0: the next generation.
Thurmond J, Goodman JL, Strelets VB, Attrill H, Gramates LS, Marygold SJ, Matthews BB, Millburn G, Antonazzo G, Trovisco V, Kaufman TC, Calvi BR; FlyBase Consortium. Thurmond J, et al. Among authors: matthews bb. Nucleic Acids Res. 2019 Jan 8;47(D1):D759-D765. doi: 10.1093/nar/gky1003. Nucleic Acids Res. 2019. PMID: 30364959 Free PMC article. Review.
FlyBase: a guided tour of highlighted features.
Gramates LS, Agapite J, Attrill H, Calvi BR, Crosby MA, Dos Santos G, Goodman JL, Goutte-Gattat D, Jenkins VK, Kaufman T, Larkin A, Matthews BB, Millburn G, Strelets VB; the FlyBase Consortium. Gramates LS, et al. Among authors: matthews bb. Genetics. 2022 Apr 4;220(4):iyac035. doi: 10.1093/genetics/iyac035. Genetics. 2022. PMID: 35266522 Free PMC article.
FlyBase: updates to the Drosophila genes and genomes database.
Öztürk-Çolak A, Marygold SJ, Antonazzo G, Attrill H, Goutte-Gattat D, Jenkins VK, Matthews BB, Millburn G, Dos Santos G, Tabone CJ; FlyBase Consortium. Öztürk-Çolak A, et al. Among authors: matthews bb. Genetics. 2024 May 7;227(1):iyad211. doi: 10.1093/genetics/iyad211. Genetics. 2024. PMID: 38301657 Free PMC article.
14 results