PCR targeted to the 16S-23S rRNA gene intergenic spacer region of Clostridium difficile and construction of a library consisting of 116 different PCR ribotypes

J Clin Microbiol. 1999 Feb;37(2):461-3. doi: 10.1128/JCM.37.2.461-463.1999.

Abstract

A reference library of types of Clostridium difficile has been constructed by PCR ribotyping isolates (n = 2,030) from environmental (n = 89), hospital (n = 1,386), community practitioner (n = 395), veterinary (n = 27), and reference (n = 133) sources. The library consists of 116 distinct types identified on the basis of differences in profiles generated with PCR primers designed to amplify the 16S-23S rRNA gene intergenic spacer region. Isolates from 55% of infections in hospitals in the United Kingdom belonged to one ribotype (type 1), but this type was responsible for only 7. 5% of community infections.

MeSH terms

  • Animals
  • Bacterial Toxins / metabolism
  • Bacterial Typing Techniques*
  • Biological Specimen Banks*
  • Clostridioides difficile / classification*
  • Clostridioides difficile / genetics*
  • Clostridioides difficile / isolation & purification
  • Enterocolitis, Pseudomembranous / microbiology
  • Genes, rRNA*
  • Humans
  • Nucleic Acid Hybridization
  • Polymerase Chain Reaction / methods*
  • RNA, Ribosomal, 16S / genetics
  • RNA, Ribosomal, 23S / genetics
  • Restriction Mapping

Substances

  • Bacterial Toxins
  • RNA, Ribosomal, 16S
  • RNA, Ribosomal, 23S