Targeting RNase L to human immunodeficiency virus RNA with 2-5A-antisense

Antivir Chem Chemother. 1998 May;9(3):225-31. doi: 10.1177/095632029800900303.

Abstract

In an attempt to develop a lead for the application of 2-5A-antisense to the targeted destruction of human immunodeficiency virus (HIV) RNA, specific target sequences within the HIV mRNAs were identified by analysis of the theoretical secondary structure. 2-5A-antisense chimeras were chosen against a total of 11 different sequences: three in the gag mRNA, three in the rev mRNA and five in the tat mRNA. 2-5A-antisense chimera synthesis was accomplished using solid-phase phosphoramidite chemistry. These chimeras were evaluated for their activity in a cell-free assay system using purified recombinant human RNase L to effect cleavage of 32P-labelled RNA transcripts of plasmids derived from HIV NL4-3. This screening revealed that of the three 2-5A-antisense chimeras targeted against gag mRNA, only one had significant HIV RNA cleavage activity, approximately 10-fold-reduced compared to the parent 2-5A tetramer and comparable to that reported for the prototypical 2-5A-anti-PKR chimera, targeted against PKR mRNA. The cleavage activity of this chimera was specific, since a scrambled antisense domain chimera and a chimera without the key 5'-monophosphate moiety were both inactive. The 10 other 2-5A-antisense chimeras against tat and rev had significantly less activity. These results imply that HIV gag RNA, like PKR RNA and a model HIV tat-oligoA-vif RNA, can be cleaved using the 2-5A-antisense approach. The results further imply that not all regions of a potential RNA target are accessible to the 2-5A-antisense approach.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Adenine Nucleotides / genetics
  • Adenine Nucleotides / pharmacology*
  • Antiviral Agents / chemical synthesis
  • Antiviral Agents / pharmacology
  • Cell Line
  • Endoribonucleases / metabolism*
  • HIV / genetics*
  • Humans
  • Nucleic Acid Conformation
  • Oligoribonucleotides / chemical synthesis
  • Oligoribonucleotides / genetics
  • Oligoribonucleotides / pharmacology*
  • RNA, Antisense / genetics*
  • RNA, Messenger / genetics
  • RNA, Viral / metabolism*
  • RNA-Binding Proteins / genetics
  • Recombinant Proteins / genetics
  • Viral Proteins / genetics

Substances

  • Adenine Nucleotides
  • Antiviral Agents
  • Oligoribonucleotides
  • RNA, Antisense
  • RNA, Messenger
  • RNA, Viral
  • RNA-Binding Proteins
  • Recombinant Proteins
  • Viral Proteins
  • 2',5'-oligoadenylate
  • Endoribonucleases
  • 2-5A-dependent ribonuclease