Restoration of the activity of active-site mutants of the hyperthermophilic beta-glycosidase from Sulfolobus solfataricus: dependence of the mechanism on the action of external nucleophiles

Biochemistry. 1998 Dec 8;37(49):17262-70. doi: 10.1021/bi981855f.

Abstract

The beta-glycosidase from the hyperthermophilic Archaeon Sulfolobus solfataricus hydrolyzes beta-glycosides following a retaining mechanism based upon the action of two amino acids: Glu387, which acts as the nucleophile of the reaction, and Glu206, which acts as the general acid/base catalyst. The activities of inactive mutants of the catalytic nucleophile Glu387Ala/Gly were restored by externally added nucleophiles. Sodium azide and sodium formate were used as external nucleophiles and the products of their reaction were characterized. Glu387Ala/Gly mutants were reactivated with 2, 4-DNP-beta-Glc substrate and the Glu387Gly mutant showed recovered activity, with the same nucleophiles, also on 2-NP-beta-Glc. The reaction catalyzed by the Glu387Gly mutant proceeded differently depending on the type of externally added nucleophile. Sodium azide restored the catalytic activity of the mutant by attacking the alpha-side of the anomeric carbon of the substrates, thereby yielding an inverting glycosidase. Sodium formate promoted the opposite behavior (retaining) in the mutant, producing 3-O-beta-linked disaccharide derivative of the substrates. A possible role of sodium formate as a biomimicking agent in replacing the natural nucleophile Glu387 is also discussed.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Binding Sites / drug effects
  • Binding Sites / genetics
  • Catalytic Domain / drug effects
  • Catalytic Domain / genetics
  • Enzyme Activation / drug effects
  • Enzyme Activation / genetics
  • Formates / pharmacology
  • Glucosidases / antagonists & inhibitors
  • Glucosidases / genetics*
  • Glucosidases / metabolism*
  • Glucosides / metabolism
  • Glucosides / pharmacology*
  • Glutamic Acid / genetics
  • Glutamine / genetics
  • Glycine / genetics
  • Hot Temperature
  • Kinetics
  • Mutagenesis, Site-Directed*
  • Sodium Azide / pharmacology
  • Sulfolobus / enzymology*

Substances

  • 2,4-dinitrophenyl-2-deoxy-2-fluoroglucoside
  • Formates
  • Glucosides
  • Glutamine
  • formic acid
  • 2',4'-dinitrophenylglucopyranoside
  • 2-nitrophenyl-beta-D-glucopyranoside
  • Glutamic Acid
  • Sodium Azide
  • Glucosidases
  • Sulfolobus solfataricus beta-glycosidase
  • Glycine