Purine-rich enhancers function in the AT-AC pre-mRNA splicing pathway and do so independently of intact U1 snRNP

RNA. 1998 Dec;4(12):1664-73. doi: 10.1017/s1355838298981432.

Abstract

A rare class of introns in higher eukaryotes is processed by the recently discovered AT-AC spliceosome. AT-AC introns are processed inefficiently in vitro, but the reaction is stimulated by exon-definition interactions involving binding of U1 snRNP to the 5' splice site of the downstream conventional intron. We report that purine-rich exonic splicing enhancers also strongly stimulate sodium channel AT-AC splicing. Intact U2, U4, or U6 snRNAs are not required for enhancer function or for exon definition. Enhancer function is independent of U1 snRNP, showing that splicing stimulation by a downstream 5' splice site and by an exonic enhancer differ mechanistically.

Publication types

  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Base Sequence
  • Enhancer Elements, Genetic*
  • Exons
  • Purines / metabolism*
  • RNA Precursors / genetics*
  • RNA Splicing*
  • RNA, Messenger / genetics*
  • RNA, Small Nuclear / metabolism
  • Ribonucleoprotein, U1 Small Nuclear / metabolism*

Substances

  • Purines
  • RNA Precursors
  • RNA, Messenger
  • RNA, Small Nuclear
  • Ribonucleoprotein, U1 Small Nuclear