Calcium binding by the N-terminal cellulose-binding domain from Cellulomonas fimi beta-1,4-glucanase CenC

Biochemistry. 1998 Sep 15;37(37):12772-81. doi: 10.1021/bi980978x.

Abstract

The interaction of the N-terminal cellulose-binding domain, CBDN1, from Cellulomonas fimi beta-1,4-glucanase CenC with calcium was investigated using NMR spectroscopy and calorimetry. CBDN1 binds a single calcium ion with an equilibrium association constant of approximately 10(5) M-1 at 35 degreesC and pH 6.0. Binding is exothermic (-42 +/- 2 kJ mol-1) under these conditions and is accompanied by a small negative change in heat capacity (DeltaCp = -0.41 +/- 0.16 kJ mol-1 K-1). From an NMR line shape analysis, the rate constants for calcium association and dissociation were found to be (5 +/- 2) x 10(7) s-1 M-1 and (4.5 +/- 0.6) x 10(2) s-1, respectively. The rapid association kinetics indicate that the calcium-binding site on CBDN1 is accessible and, to the first approximation, preformed. Based on patterns of chemical shift perturbations, and structural comparisons with the Bacillus sp. 1, 3-1,4-beta-glucanases, the backbone carbonyl oxygens of Thr8, Gly30, and Asp142 and a side chain carboxyl oxygen of Asp142 are postulated to form the calcium-binding site of CBDN1. Consistent with the calcium-independent affinity of CBDN1 for cellopentaose, this exposed site is located on the face of CBDN1 opposite to that forming the oligosaccharide-binding cleft. The midpoint denaturation temperature of CBDN1 is increased by approximately 8 degreesC at pH 6.0 in the presence of saturating amounts of calcium, confirming that metal ion binding is thermodynamically linked to native-state stability.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bacterial Proteins / metabolism
  • Binding Sites
  • Calcium / chemistry
  • Calcium / metabolism*
  • Cellulose / metabolism*
  • Glucan 1,4-beta-Glucosidase
  • Gram-Positive Asporogenous Rods / enzymology
  • Kinetics
  • Models, Molecular
  • Oligosaccharides / metabolism
  • Peptide Fragments / chemistry
  • Peptide Fragments / metabolism*
  • Protein Structure, Tertiary
  • Thermodynamics
  • beta-Glucosidase / chemistry
  • beta-Glucosidase / metabolism*

Substances

  • Bacterial Proteins
  • CipB protein, Photorhabdus luminescens
  • Oligosaccharides
  • Peptide Fragments
  • maltopentaose
  • Cellulose
  • beta-Glucosidase
  • Glucan 1,4-beta-Glucosidase
  • Calcium