p53 binds to a constitutively nucleosome free region of the mdm2 gene

Oncogene. 1998 Mar 5;16(9):1171-81. doi: 10.1038/sj.onc.1201631.

Abstract

The mdm2 oncogene is a p53 responsive gene which contains both a p53 independent and a p53 dependent promoter (P1 and P2 respectively). We have utilized ligation mediated PCR genomic footprinting in order to investigate the intra-nuclear binding of p53 to the mdm2 P2 promoter. The DNase I protection pattern in nuclei from murine cells lacking p53 has been compared to the protection pattern in cells containing a temperature sensitive p53-Val135. At 32 degrees C p53-Val135 assumes a wild-type conformation while at 37 degrees C this p53 is conformationally mutant. We observed clear wild-type p53 dependent protection of the putative p53 response elements (REs) as well as protection of the adjacent TATA box. Interestingly the protection pattern observed with purified wild-type p53 on naked DNA showed less nucleotide sequence protection than the protection observed to be p53 dependent in nuclei. Constitutive DNase I hypersensitivity at both the mdm2 P1 and P2 promoters was detected by indirect Southern blot analysis. DNase I hypersensitivity reflects altered chromatin conformations resulting, most likely, from the absence of nucleosomes. Taken together our findings suggest that the mdm2 P2 promoter is maintained in a nucleosome free state which is pre-primed for transcriptional activation by p53.

Publication types

  • Comparative Study
  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Animals
  • Base Sequence
  • Binding Sites
  • Cell Line
  • Cell Nucleus / metabolism*
  • Cell Nucleus / ultrastructure
  • DNA Footprinting
  • Deoxyribonuclease I
  • Mice
  • Molecular Sequence Data
  • Neoplasm Proteins / genetics
  • Nuclear Proteins*
  • Nucleosomes / ultrastructure
  • Polymerase Chain Reaction
  • Promoter Regions, Genetic*
  • Proto-Oncogene Proteins / genetics*
  • Proto-Oncogene Proteins c-mdm2
  • Restriction Mapping
  • TATA Box
  • Tumor Suppressor Protein p53 / metabolism*

Substances

  • Neoplasm Proteins
  • Nuclear Proteins
  • Nucleosomes
  • Proto-Oncogene Proteins
  • Tumor Suppressor Protein p53
  • Mdm2 protein, mouse
  • Proto-Oncogene Proteins c-mdm2
  • Deoxyribonuclease I