RNA editing and alternative splicing generate mRNA transcript diversity from the Drosophila 4f-rnp locus

Gene. 1997 Dec 19;204(1-2):267-76. doi: 10.1016/s0378-1119(97)00465-4.

Abstract

Extensive sequencing of genomic 4f-rnp and 15 cDNA clones isolated from libraries of 0-4-h embryos, pupae, and adult heads from Drosophila melanogaster has enabled identification of factors resulting in transcript sequence diversity. The 4f-rnp gene contains eight small introns. Among non-edited cDNAs, one transcript class potentially encodes a 943-amino-acid protein, within which several motifs are predicted, including a single C-terminal RNA-binding domain. Intron 5 is retained in all cDNAs examined except for a pupal cDNA, where it is excised. This potentially introduces an in-frame stop codon and predicts a truncated protein of 639 amino acids. One adult head transcript class is edited, some 31% of As being converted to Gs exclusive of edits within introns. An edit site in intron 4 changes a canonical 3'-terminal AG to GG, which interferes with splicing and is predicted to introduce a stop codon. A potential editing substrate recognition element in 4f-rnp contains the weak consensus sequence: 5'-G-G-G-N-A-A-G-3', which may interact with double-stranded RNA adenosine deaminase following pairing of 4f-rnp mRNA with an antisense transcript. It is possible that extensive editing in 4f-rnp destabilizes transcripts and thus provides a novel mechanism for post-transcriptional control of gene expression, although resolution of this point will require study of additional edited transcripts.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Alternative Splicing*
  • Amino Acid Sequence
  • Animals
  • Base Sequence
  • Binding Sites
  • Consensus Sequence
  • DNA, Complementary
  • Drosophila / genetics*
  • Drosophila Proteins*
  • Genes, Insect
  • Genetic Variation*
  • Molecular Sequence Data
  • RNA Editing*
  • RNA, Messenger / genetics
  • RNA-Binding Proteins / genetics*
  • Restriction Mapping
  • Ribonucleoproteins / genetics*
  • Sequence Homology, Amino Acid

Substances

  • DNA, Complementary
  • Drosophila Proteins
  • RNA, Messenger
  • RNA-Binding Proteins
  • RNA-binding protein 4F, Drosophila
  • Ribonucleoproteins

Associated data

  • GENBANK/Y15249
  • GENBANK/Y15250
  • GENBANK/Y15251