cDNA-derived amino-acid sequence of a land turtle (Geochelone carbonaria) beta-chain hemoglobin

Biochem Mol Biol Int. 1997 Jun;42(2):255-60. doi: 10.1080/15216549700202641.

Abstract

The cDNA sequence encoding the turtle Geochelone carbonaria beta-chain was determinated. The isolation of hemoglobin mRNA was based on degenerate primers' PCR in combination with 5'- and 3'-RACE protocol. The full length cDNA is 615 bp with the ATG start codon at position 53 and TGA stop codon at position 495; The AATAAA polyadenylation signal is found at position 599. The deduced polypeptyde contains 146 amino-acid residues. The predicted amino acid sequence shares 83% identity with the beta-globin of a related specie, the aquatic turtle C. p. belli. Otherwise, identity is higher when compared with chicken beta-Hb (80%) than with other reptilian orders (Squamata, 69%, and Crocodilia, 61%). Compared with human HbA, there is 67% identity, and at least three amino acid substitutions could be of some functional significance (Glu43 beta-->Ser, His116 beta-->Thr and His143 beta-->Leu). To our knowledge this represents the first cDNA sequence of a reptile globin gene described.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Animals
  • Cloning, Molecular
  • DNA, Complementary / genetics
  • Globins / genetics*
  • Humans
  • Molecular Sequence Data
  • Sequence Analysis
  • Sequence Homology, Amino Acid
  • Transcription, Genetic
  • Turtles / genetics*

Substances

  • DNA, Complementary
  • Globins