Interaction of the nuclear matrix-associated region (MAR)-binding proteins, SATB1 and CDP/Cux, with a MAR element (L2a) in an upstream regulatory region of the mouse CD8a gene

J Biol Chem. 1997 Jul 18;272(29):18440-52. doi: 10.1074/jbc.272.29.18440.

Abstract

Matrix-associated regions (MARs), AT-rich DNA segments that have an affinity for the nuclear matrix, have been shown to play a role in transcriptional regulation of eukaryotic genes. The present study demonstrates that a DNA element, called L2a, which has been implicated in the transcriptional regulation of the mouse CD8a gene encoding an important T cell coreceptor, is a MAR. Moreover, the identities of two nuclear proteins, L2a-P1 and L2a-P2, previously shown to bind to the L2a element, have been determined. The L2a-P1 protein found to be present in all CD8-positive T cell lines tested is SATB1, a known MAR-binding protein. The widely expressed L2a-P2 protein is CDP/Cux, a MAR-binding protein that has been associated with repression of gene transcription. Interaction of both proteins with the L2a element was studied using the missing nucleoside approach, DNase I footprinting, and electrophoretic mobility shift assays with wild type and mutant L2a elements. The data suggest that CDP/Cux bound to the L2a element is displaced by binding of SATB1 and the accompanying conformational change in the DNA lying between the primary binding sites of SATB1 and CDP/Cux. We suggest that displacement of CDP/Cux by SATB1 favors transcription of the CD8a gene, possibly by enhancing or altering its association with the nuclear matrix.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Animals
  • Base Sequence
  • Binding Sites
  • CD8 Antigens / biosynthesis*
  • CD8 Antigens / genetics*
  • Cell Line
  • DNA-Binding Proteins / metabolism*
  • Homeodomain Proteins / metabolism
  • Matrix Attachment Region Binding Proteins*
  • Mice
  • Models, Structural
  • Molecular Sequence Data
  • Mutagenesis, Site-Directed
  • Nuclear Matrix / metabolism*
  • Nuclear Proteins / metabolism*
  • Recombinant Proteins / metabolism
  • Regulatory Sequences, Nucleic Acid*
  • Repressor Proteins / metabolism*
  • T-Lymphocytes
  • Transcription, Genetic*
  • Transfection

Substances

  • CD8 Antigens
  • Cux1 protein, mouse
  • DNA-Binding Proteins
  • Homeodomain Proteins
  • Matrix Attachment Region Binding Proteins
  • Nuclear Proteins
  • Recombinant Proteins
  • Repressor Proteins
  • SATB1 protein, human