Analysis of the fusion protein gene of the porcine rubulavirus LPMV: comparative analysis of paramyxovirus F proteins

Virus Genes. 1997;14(1):55-61. doi: 10.1023/a:1007987407250.

Abstract

Complementary DNA clones representing the fusion (F) protein gene of the porcine rubulavirus LPMV were isolated and sequenced. The F gene was found to be 1,845 nucleotides long containing one long open reading frame capable of encoding a protein of 541 amino acids. The cleavage motif for F0 into F1 and F2 is His-Arg-Lys-Lys-Arg. A sequence comparison and a phylogenetic analysis was performed in order to identify possible functional domains of paramyxovirus fusion proteins and also to classify the porcine rubulavirus. The F gene of LPMV is most closely related to the human mumps virus and simian virus type 5 F genes, and is therefore classified into the rubulavirus genus. A coding region for a small hydrophobic protein was however not found between the F and hemagglutinin-neuraminidase (HN) genes as previously found in both SV5 and mumps.

Publication types

  • Comparative Study
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Animals
  • Base Sequence
  • Binding Sites / genetics
  • Cloning, Molecular
  • DNA, Complementary / genetics
  • DNA, Viral / genetics
  • Genes, Viral*
  • Humans
  • Molecular Sequence Data
  • Mumps virus / genetics
  • Open Reading Frames
  • Paramyxovirinae / classification
  • Paramyxovirinae / genetics*
  • Phylogeny
  • Rubulavirus / classification
  • Rubulavirus / genetics*
  • Sequence Homology, Amino Acid
  • Swine
  • Viral Fusion Proteins / genetics*

Substances

  • DNA, Complementary
  • DNA, Viral
  • Viral Fusion Proteins

Associated data

  • GENBANK/Y10803