Structure of the endoglucanase I from Fusarium oxysporum: native, cellobiose, and 3,4-epoxybutyl beta-D-cellobioside-inhibited forms, at 2.3 A resolution

Biochemistry. 1997 May 13;36(19):5902-11. doi: 10.1021/bi962963+.

Abstract

The mechanisms involved in the enzymatic degradation of cellulose are of great ecological and commercial importance. The breakdown of cellulose by fungal species is performed by a consortium of free enzymes, known as cellobiohydrolases and endoglucanases, which are found in many of the 57 glycosyl hydrolase families. The structure of the endoglucanase I (EG I), found in glycosyl hydrolase family 7, from the thermophilic fungus Fusarium oxysporum has been solved at 2.3 A resolution. In addition to the native enzyme, structures have also been determined with both the affinity label, 3,4-epoxybutyl beta-D-cellobioside, and the reaction product cellobiose. The affinity label is covalently bound, as expected, to the catalytic nucleophile, Glu197, with clear evidence for binding of both the R and S stereoisomers. Cellobiose is found bound to the -2 and -1 subsites of the enzyme. In marked contrast to the structure of EG I with a nonhydrolyzable thiosaccharide analog, which spanned the -2, -1, and +1 subsites and which had a skew-boat conformation for the -1 subsite sugar [Sulzenbacher, G., et al. (1996) Biochemistry 35, 15280-15287], the cellobiose complex shows no pyranoside ring distortion in the -1 subsite, implying that strain is induced primarily by the additional +1 subsite interactions and that the product is found, as expected, in its unstrained conformation.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Binding Sites
  • Catalysis
  • Cellobiose / metabolism*
  • Cellulase / antagonists & inhibitors*
  • Cellulase / chemistry*
  • Cellulose 1,4-beta-Cellobiosidase
  • Crystallography, X-Ray
  • Epoxy Compounds / chemistry
  • Epoxy Compounds / metabolism*
  • Fungal Proteins / antagonists & inhibitors
  • Fungal Proteins / chemistry*
  • Glucosides / chemistry
  • Glucosides / metabolism*
  • Macromolecular Substances
  • Molecular Sequence Data
  • Oligosaccharides / chemistry
  • Oligosaccharides / metabolism
  • Substrate Specificity

Substances

  • Epoxy Compounds
  • Fungal Proteins
  • Glucosides
  • Macromolecular Substances
  • Oligosaccharides
  • 3,4-epoxybutyl-beta-cellobioside
  • Cellobiose
  • Cellulase
  • Cellulose 1,4-beta-Cellobiosidase

Associated data

  • PDB/1OVW
  • PDB/2OVW
  • PDB/3OVW
  • PDB/4OVW