Chromosome synapsis in meiosis is performed through the formation of a synaptonemal complex (SC). The SC aggregates homologues until the diplotene stage, when the function of physical binding is carried out by a chiasmata. SC formation is controlled by specific genes. Regularities of SC formation in animals and plants are being studied at the Laboratory of Cytogenetics, Vavilov Institute of General Genetics, the Russian Academy of Sciences. It was shown that, in Drosophila melanogaster, the presence or absence of SC in meiosis is determined by balance between autosomes and sex chromosomes. i.e., SC is formed according to regularities in sex determination. The dose of the 8C-11A segment of X chromosome plays a key role in this process. Eight mutations in synaptic genes that affect SC formation were studied in rye Secale cereale. SC variants occurring in heteromorphic sex chromosomes were analyzed in the Ellobius genera and in B-chromosomes of Apodemus peninsulae. It was shown that, in addition to homologous synapsis, non-homologous synapsis of aberrant chromosomes occurs in rye and mouse heterozygotes at chromosome rearrangements. Twice as many heterozygous chromosome rearrangements were revealed, when the SC was studied at pachytene instead of diakinesis and metaphase I. Simple methods of SC investigations extended the capabilities of cytogenetic analysis of meiosis and provided new perspectives for studying the action of meiotic gen.