Fe- and Co-bleomycins bound to site specific and nonspecific DNA decamers: comparative binding and reactivity of their metal centers

Biochemistry. 1997 Apr 8;36(14):4367-74. doi: 10.1021/bi9625354.

Abstract

Co- and Fe-bleomycins (Blms) have been reacted with DNAa, d(GGAAGCTTCC)2, containing a specific site for cleavage, and DNAb, d(GGAAATTTCC)2, a closely related nonspecific 10-mer, to survey whether features of structure and reactivity of these adducts vary systematically as a function of the base sequence of the DNA oligomer. The ESR spectrum of NO-Fe(II)BlmDNAa is rhombically perturbed in comparison with that of NO-Fe(II)BlmDNAb, which is nearly identical to the spectrum of NO-Fe(II)Blm. The ESR spectrum of Fe(III)BlmDNAa in phosphate buffer is low-spin; that of Fe(III)BlmDNAb is high-spin as seen with Fe(III)Blm alone. According to absorbance spectroscopy, O2-Fe(II)BlmDNAa is stabilized in comparison with the DNAb adduct. Similar stabilization of O2-Co(II)Blm bound to DNAa but not to DNAb was also observed by ESR spectroscopy. HO2(-)-Co(III)Blm A2 binds in slow exchange on the NMR time scale to DNAa at its 5'-G-pyrimidine-3' site of cleavage. In contrast, fluorescence and NMR spectroscopy demonstrate that most of HO2(-)-Co(III)Blm A2 binds stoichiometrically in fast exchange to DNAb. The reactions of Fe(III)BlmDNAa and Fe(III)BlmDNAb with ascorbate and O2 reveal that the latter becomes activated and cleaves its 10-mer, producing base propenals, at a faster initial rate. Thus, in two series of metallobleomycins, (A) NO-Fe(II)Blm, O2-Fe(II)Blm, Fe(III)Blm in phosphate buffer, and HO2(-)-Fe(III)Blm and (B) O2-Co(II)Blm and HO2(-)-Co(III)Blm, the metal domain of each species interacts differently with DNA depending upon its base sequence.

Publication types

  • Comparative Study
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Antibiotics, Antineoplastic / chemistry
  • Antibiotics, Antineoplastic / metabolism
  • Ascorbic Acid / metabolism
  • Bleomycin / analogs & derivatives*
  • Bleomycin / chemistry
  • Bleomycin / metabolism
  • Cobalt / chemistry
  • Cobalt / metabolism
  • DNA / chemistry
  • DNA / metabolism*
  • DNA Adducts / chemistry
  • DNA Adducts / metabolism
  • Electron Spin Resonance Spectroscopy
  • Iron / chemistry
  • Iron / metabolism
  • Magnetic Resonance Spectroscopy
  • Molecular Structure
  • Nucleic Acid Conformation
  • Oligodeoxyribonucleotides / chemistry
  • Oligodeoxyribonucleotides / metabolism
  • Peroxides / metabolism
  • Spectrometry, Fluorescence
  • Spectrophotometry

Substances

  • Antibiotics, Antineoplastic
  • DNA Adducts
  • Oligodeoxyribonucleotides
  • Peroxides
  • cobalt bleomycin
  • iron bleomycin
  • Bleomycin
  • Cobalt
  • DNA
  • Iron
  • Ascorbic Acid