An NMR self-diffusion study of the interactions between spermidine and oligonucleotides

Biopolymers. 1996 Apr;38(4):505-13. doi: 10.1002/(SICI)1097-0282(199604)38:4%3C505::AID-BIP6%3E3.0.CO;2-X.

Abstract

Self-diffusion coefficients have been determined by pulsed field gradient nmr methods for spermidine in solutions of the oligonucleotides d(GC)4 and d(GGAATTCC). The self-diffusion behavior of spermidine in solution of d(GC)4 is very similar to that observed previously for methylspermidine (completely N-methylated spermidine). Moreover, the self-diffusion behaviors of spermidine in solutions of d(GC)4 and d(GGAATTCC) are also quite similar, indicating that there is no significant influenceon on self-diffusion of oligonucleotide base composition. Furthermore, self-diffusion coefficients of the oligonucleotide d(GC)8 show only a small dependence on oligonucleotide concentration, and no measurable dependence on sodium ion or magnesium ion concentration.

Publication types

  • Comparative Study
  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Base Sequence
  • Diffusion
  • Drug Interactions
  • Magnetic Resonance Spectroscopy / methods
  • Molecular Sequence Data
  • Oligonucleotides / chemistry*
  • Spermidine / chemistry*

Substances

  • Oligonucleotides
  • Spermidine