Characterization of the mouse Tcra-V22 gene subfamily

Immunogenetics. 1996;44(6):432-40. doi: 10.1007/BF02602804.

Abstract

T-cell receptors (Tcrs) of higher organisms play a key role in the specific recognition of self and non-self molecules in the immune system. The large number of Tcr variable (V) genes have been organized into V gene subfamilies according to their sequence similarity at the nucleotide and amino acid level. We cloned and characterized four new members of the Tcra-V22 gene subfamily at the genomic level using a simple and sensitive technique that can rapidly clone members of any multi-member gene family. Sequence analysis reveals that the four Tcra-V22 gene subfamily members have more than 98% sequence similarity in their coding regions, at the nucleotide and amino acid levels. However, the intron between the leader and the coding region varies up to 7% between members of the Tcra-V22 gene subfamily. Comparison of the multi-member Tcra-V22 gene subfamily with other multi-member Tcra-V gene subfamilies (V2, V8, and V11), shows that Tcra-V22 is unique in that it has multiple members with nearly identical amino acid sequence and which are not inherently pseudogenes. Sequence similarity analysis of the Tcra-V22 subfamily with the prototypes of all other Tcra-V subfamilies revealed that the Tcra-V22 subfamily has the closest sequence similarity to that of Tcra-V18 (77% at the nucleotide level and 71% at the amino acid level).

MeSH terms

  • Amino Acid Sequence
  • Animals
  • Base Sequence
  • Blotting, Southern
  • Cloning, Molecular / methods
  • Mice
  • Mice, Inbred Strains
  • Molecular Sequence Data
  • Multigene Family
  • Receptors, Antigen, T-Cell, alpha-beta / genetics*
  • Sequence Alignment
  • Sequence Analysis, DNA

Substances

  • Receptors, Antigen, T-Cell, alpha-beta

Associated data

  • GENBANK/U46076
  • GENBANK/U46077
  • GENBANK/U46078
  • GENBANK/U46079
  • GENBANK/U47051