A sparsomycin-resistant mutant of Halobacterium salinarium lacks a modification at nucleotide U2603 in the peptidyl transferase centre of 23 S rRNA

J Mol Biol. 1996 Aug 16;261(2):231-8. doi: 10.1006/jmbi.1996.0455.

Abstract

Sparsomycin, a broad-spectrum antibiotic, acts at the peptidyl transferase centre of the ribosome, stabilizing peptidyl-tRNA binding at the P-site and weakening ternary complex binding. A sparsomycin-resistant mutant was isolated for the archaeon Halobacterium salinarium and shown to lack a post-transcriptional modification of U2603 (Escherichia coli numbering U2584), which is a universally conserved uridine base located within the peptidyl transferase loop of 23 S rRNA. This mutant also exhibited altered sensitivities to the peptidyl transferase antibiotics anisomycin, chloramphenicol and puromycin. Several lines of evidence indicate that the unmodified uridine base lies within the P-substrate site of the peptidyl transferase centre.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Anti-Bacterial Agents / pharmacology
  • Base Sequence
  • Binding Sites
  • Halobacterium / drug effects*
  • Halobacterium / genetics
  • Molecular Sequence Data
  • Mutation / genetics
  • Nucleic Acid Conformation
  • Peptidyl Transferases
  • Protein Synthesis Inhibitors / pharmacology*
  • RNA Processing, Post-Transcriptional*
  • RNA, Ribosomal, 23S / chemistry
  • RNA, Ribosomal, 23S / genetics
  • RNA, Ribosomal, 23S / metabolism*
  • RNA, Transfer, Phe
  • Ribosomes / drug effects
  • Sequence Analysis, RNA
  • Sparsomycin / pharmacology*
  • Uridine / chemistry

Substances

  • Anti-Bacterial Agents
  • Protein Synthesis Inhibitors
  • RNA, Ribosomal, 23S
  • RNA, Transfer, Phe
  • Sparsomycin
  • Peptidyl Transferases
  • Uridine