Human CFTR gene sequences in regions flanking exon 10: a simple repeat sequence polymorphism in intron 9

Biochem Biophys Res Commun. 1996 Feb 6;219(1):140-5. doi: 10.1006/bbrc.1996.0195.

Abstract

A 2,908-bp segment of genomic DNA containing exon 10 and flanking intron regions of the human cystic fibrosis transmembrane conductance regulator gene was sequenced. A 30-bp sequence discrepancy and three missing nucleotides were detected when compared to a previously published 831-bp sequence. In the 30-bp region of sequence discrepancy, only a primer based on the new sequence information presented in this study gave products from polymerase chain reaction amplification of cellular DNA and a plasmid DNA encompassing the exon 10 region of CFTR. A 4-bp (TAAA) simple repeat sequence was also identified in intron 9 region. This repeat is dimorphic with nine (TAAA)9 or eleven (TAAA)11 copies on different chromosomes. Eleven repeats were exclusively associated with chromosomes carrying the delta508 mutation. Both 9 and 11 repeats were detected in non-delta508 chromosomes.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Base Sequence
  • Cystic Fibrosis Transmembrane Conductance Regulator / genetics*
  • DNA Primers
  • Exons*
  • Genotype
  • Humans
  • Introns*
  • Molecular Sequence Data
  • Mutation
  • Polymerase Chain Reaction
  • Polymorphism, Genetic*
  • Regulatory Sequences, Nucleic Acid
  • Repetitive Sequences, Nucleic Acid*

Substances

  • CFTR protein, human
  • DNA Primers
  • Cystic Fibrosis Transmembrane Conductance Regulator

Associated data

  • GENBANK/L49160