Molecular characterisation of UK isolates of barley yellow mosaic bymovirus

Virus Res. 1995 Oct;38(2-3):193-204. doi: 10.1016/0168-1702(95)00057-w.

Abstract

Several isolates of barley yellow mosaic virus (BaYMV) from different sites in the UK, including some that were virulent on European resistant winter barley cultivars (resistance-breaking strain: BaYMV-2) and some that were not, were examined by RT-PCR, restriction mapping and sequencing of selected parts of the virus genome. Nucleotide and predicted amino acid sequences were determined for the 5'-terminal region, part of the NIa coding region and the coat protein coding region on RNA 1 and an area at the N-terminus of the 70-kDa protein coding region on RNA 2. The sequences differed from those previously reported for a BaYMV isolate from Japan and for two German isolates, one of which was of the BaYMV-2 strain. There were no strain-specific amino acid differences and the few, non-consecutive, nucleotide differences detected were probably not significant and were insufficient to develop a rapid diagnostic test to distinguish BaYMV-2 from other isolates. Restriction mapping of RNA 2 cDNA again showed no consistent strain-related differences. The differences previously reported between the two German isolates are probably not strain-related.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Base Sequence
  • Capsid / genetics
  • DNA Primers
  • DNA, Viral / genetics
  • Hordeum / virology*
  • Molecular Sequence Data
  • Potyvirus / genetics*
  • Potyvirus / isolation & purification
  • RNA, Viral / genetics
  • Restriction Mapping
  • United Kingdom

Substances

  • DNA Primers
  • DNA, Viral
  • RNA, Viral

Associated data

  • GENBANK/X95695
  • GENBANK/X95696
  • GENBANK/X95697
  • GENBANK/X95698
  • GENBANK/X95699
  • GENBANK/X95700