Initial binding of the elongation factor Tu.GTP.aminoacyl-tRNA complex preceding codon recognition on the ribosome

J Biol Chem. 1996 Jan 12;271(2):646-52. doi: 10.1074/jbc.271.2.646.

Abstract

The first step in the sequence of interactions between the ribosome and the complex of elongation factor Tu (EF-Tu), GTP, and aminoacyl-tRNA, which eventually leads to A site-bound aminoacyl-tRNA, is the codon-independent formation of an initial complex. We have characterized the initial binding and the resulting complex by time-resolved (stopped-flow) and steady-state fluorescence measurements using several fluorescent tRNA derivatives. The complex is labile, with rate constants of 6 x 10(7) M-1 s-1 and 24 s-1 (20 degrees C, 10 mM Mg2+) for binding and dissociation, respectively. Both thermodynamic and activation parameters of initial binding were determined, and five Mg2+ ions were estimated to participate in the interaction. While a cognate ternary complex proceeds form initial binding through codon recognition to rapid GTP hydrolysis, the rate constant of GTP hydrolysis in the non-cognate complex is 4 orders of magnitude lower, despite the rapid formation of the initial complex in both cases. Hence, the ribosome-induced GTP hydrolysis by EF-Tu is strongly affected by the presence of the tRNA. This suggests that codon-anticodon recognition, which takes place after the formation of the initial binding complex, provides a specific signal that triggers fast GTP hydrolysis by EF-Tu on the ribosome.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Codon / metabolism
  • Escherichia coli / metabolism*
  • Fluorescent Dyes
  • Guanosine Triphosphate / metabolism*
  • Models, Biological
  • Peptide Elongation Factor Tu / metabolism*
  • RNA, Transfer, Amino Acyl / metabolism*
  • Ribosomes / metabolism*

Substances

  • Codon
  • Fluorescent Dyes
  • RNA, Transfer, Amino Acyl
  • Guanosine Triphosphate
  • Peptide Elongation Factor Tu