Sigma s-dependent promoters in Escherichia coli are located in DNA regions with intrinsic curvature

Nucleic Acids Res. 1993 Aug 11;21(16):3667-70. doi: 10.1093/nar/21.16.3667.

Abstract

Expression of a number of genes during stationary phase in Escherichia coli is controlled by the alternative sigma factor sigma s (KatF). Promoters recognized by sigma s do not present a well-defined consensus sequence in their -10 and -35 regions. By polyacrylamide gel electrophoresis of DNA fragments performed at different temperatures, and by computer prediction analyses, we have found that sigma s-regulated promoters are located in regions where DNA shows intrinsic curvatures. This feature does not appear in a stationary-phase-induced promoter which is not controlled by sigma s. We propose that DNA bending may help in recognition and/or binding of sigma s to stationary-phase-induced promoters.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bacterial Proteins / metabolism*
  • Bacteriocins / genetics
  • Computer Simulation
  • DNA, Bacterial / chemistry*
  • DNA, Bacterial / genetics*
  • DNA, Bacterial / metabolism
  • Electrophoresis, Polyacrylamide Gel
  • Escherichia coli / genetics*
  • Models, Molecular
  • Nucleic Acid Conformation*
  • Promoter Regions, Genetic*
  • Sigma Factor / metabolism*

Substances

  • Bacterial Proteins
  • Bacteriocins
  • DNA, Bacterial
  • Sigma Factor
  • sigma factor KatF protein, Bacteria
  • microcin