Fragmentation of protonated peptides: surface-induced dissociation in conjunction with a quantum mechanical approach

Anal Chem. 1993 Oct 15;65(20):2859-72. doi: 10.1021/ac00068a024.

Abstract

This paper describes the results of a systematic investigation designed to assess the utility of surface-induced dissociation in the structural analysis of small peptides (500-1800u). A number of different peptides, ranging in mass and amino acid sequence, are fragmented by collision with a surface in a tandem mass spectrometer and the spectra are compared with data obtained by gas-phase collisional activation. The surface-induced dissociation spectra provide ample sequence information for the peptides. Side-chain cleavage ions of type w, which are generally detected upon kiloelectronvolt collisions with gaseous targets but not upon electronvolt collisions with gaseous targets, are detected in the ion-surface collision experiments. A theoretical approach based on MNDO bond order calculations is suggested for the description of peptide fragmentation. This model, supplemented by ab initio calculations, serves as a complement to the experimental work described in the paper and explains (i) the easy cleavage of the amide bond, (ii) charge-remote backbone and side-chain cleavages, and (iii) the influence of intramolecular H-bonding.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Amino Acid Sequence
  • Hydrogen Bonding
  • Ions
  • Mass Spectrometry / methods
  • Molecular Sequence Data
  • Peptide Fragments / chemistry
  • Peptides / chemistry*
  • Protons
  • Surface Properties

Substances

  • Ions
  • Peptide Fragments
  • Peptides
  • Protons