Nucleotide sequence of the coat protein coding region of tulip breaking virus

Virus Genes. 1994 Mar;8(2):165-7. doi: 10.1007/BF01703074.

Abstract

cDNA of tulip breaking virus-tulip (TBV-tulip) RNA was synthesized and cloned in E. coli. One clone that contains a 4.5 kb insert was identified by restriction enzyme analysis, dot immunobinding assay (DIBA), and partial sequencing. Then 1479 nucleotides of the 3'-terminus of the clone were sequenced and revealed that the sequence contains one open reading frame (ORF), followed by an untranslated region of 255 nucleotides and a poly(A) tract. The deduced amino acid sequence was found to include the C terminus of the predicted RNA-dependent RNA polymerase and the coat protein. A glutamine-alanine dipeptide was identified as a putative NIa protease cleavage site at the N terminus of the coat protein.

MeSH terms

  • Amino Acid Sequence
  • Base Sequence
  • Binding Sites
  • Capsid / chemistry
  • Capsid / genetics*
  • Capsid / metabolism
  • Capsid Proteins*
  • Cloning, Molecular
  • DNA, Complementary
  • Endopeptidases
  • Genes, Viral / genetics*
  • Molecular Sequence Data
  • Open Reading Frames
  • Potyvirus / genetics*
  • Protein Processing, Post-Translational
  • RNA-Dependent RNA Polymerase / genetics
  • Sequence Analysis, DNA
  • Viral Proteins / metabolism
  • Viral Structural Proteins / genetics*

Substances

  • Capsid Proteins
  • DNA, Complementary
  • Viral Proteins
  • Viral Structural Proteins
  • coat protein, Tulip breaking virus
  • RNA-Dependent RNA Polymerase
  • Endopeptidases
  • nuclear inclusion protein a, mosaic viruses

Associated data

  • GENBANK/X63630