A novel nonpeptide HIV-1 protease inhibitor: elucidation of the binding mode and its application in the design of related analogs

J Med Chem. 1994 Aug 19;37(17):2664-77. doi: 10.1021/jm00043a006.

Abstract

HIV-1 protease has been identified as a significant target enzyme in AIDS research. While numerous peptide-derived inhibitors have been described, the identification of a nonpeptide inhibitor remains an important goal. Using an HIV-1 protease mass screening technique, 4-hydroxy-3-(3-phenoxypropyl)-2H-1-benzopyran-2-one (1) was identified as a nonpeptide competitive inhibitor of the enzyme. Employing a Monte Carlo-based docking procedure, the coumarin was docked in the active site of the enzyme, revealing a binding mode that was later confirmed by the X-ray crystal analysis. Several analogs were prepared to test the binding interactions and improve the overall binding affinity. The most active compound in the study was 4,7-dihydroxy-3-[4-(2-methoxyphenyl)butyl]-2H-1-benzopyran-2-one (31).

Publication types

  • Comparative Study

MeSH terms

  • 4-Hydroxycoumarins / chemistry*
  • 4-Hydroxycoumarins / metabolism
  • Acquired Immunodeficiency Syndrome / drug therapy
  • Binding Sites
  • Coumarins / chemical synthesis
  • Coumarins / chemistry*
  • Coumarins / metabolism
  • Crystallography, X-Ray
  • Drug Design
  • HIV Protease / chemistry*
  • HIV Protease / metabolism
  • HIV Protease Inhibitors / chemistry*
  • HIV Protease Inhibitors / metabolism
  • HIV-1 / enzymology
  • Humans
  • Models, Molecular
  • Molecular Conformation
  • Molecular Structure
  • Monte Carlo Method
  • Oligopeptides / chemistry
  • Oligopeptides / metabolism
  • Protein Conformation

Substances

  • 4-Hydroxycoumarins
  • Coumarins
  • HIV Protease Inhibitors
  • Oligopeptides
  • MVT 101
  • PD 099560
  • HIV Protease