Stem-loop structure synergy in binding cellular proteins to the 5' noncoding region of poliovirus RNA

Virology. 1995 Feb 1;206(2):923-34. doi: 10.1006/viro.1995.1015.

Abstract

Picornavirus RNAs interact with host cellular proteins to direct viral translation initiation by internal ribosome entry. In this study, we analyzed the RNA-protein interactions involving computer-predicted stem-loops F and G (also referred to as V and VI, respectively) of the 5' NCR of poliovirus RNA. This region of the 5' NCR harbors part of the putative internal ribosome entry site. We show that a ribonucleoprotein complex involving stem-loop G RNA is composed, at least in part, of a 39-kDa HeLa cell polypeptide which contacts the viral RNA directly. Interestingly, the binding site of a neuronal cell 60-kDa protein, not present in HeLa cells, was mapped specifically to stem-loop G. We also determined that a subset of cellular factors requires a higher order structure synergy before binding to poliovirus RNAs. This was demonstrated by using a longer RNA encompassing both stem-loops F and G in the binding assays. Indeed, a protein with an approximate molecular weight of 36 kDa was shown to interact specifically with these poliovirus sequences. In addition, the role of a cellular polypeptide (p57 or PTB) in poliovirus replication functions was studied. Our results suggest that p57 interactions with stem-loops F-G are not required for internal ribosome binding on poliovirus RNAs.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Base Sequence
  • Binding Sites
  • HeLa Cells
  • Humans
  • Kinetics
  • Molecular Sequence Data
  • Neoplasm Proteins / isolation & purification
  • Neoplasm Proteins / metabolism
  • Neuroblastoma
  • Neurons / metabolism
  • Nucleic Acid Conformation*
  • Poliovirus / genetics*
  • Protein Binding
  • RNA, Viral / chemistry*
  • RNA, Viral / isolation & purification
  • RNA, Viral / metabolism*
  • RNA-Binding Proteins / isolation & purification
  • RNA-Binding Proteins / metabolism*
  • Ribonucleoproteins / chemistry
  • Ribonucleoproteins / metabolism
  • Transcription, Genetic
  • Tumor Cells, Cultured
  • Ultraviolet Rays
  • Uridine / metabolism

Substances

  • Neoplasm Proteins
  • RNA, Viral
  • RNA-Binding Proteins
  • Ribonucleoproteins
  • Uridine