Radiolytic signature of Z-DNA

Nucleic Acids Res. 1994 Dec 25;22(25):5565-70. doi: 10.1093/nar/22.25.5565.

Abstract

Ionizing radiations induce various damages in DNA via the hydroxyl radical OH. generated by the radiolysis of water. We compare here the radiosensitivity of B- and Z-DNA, by using a Z-prone stretch included in a plasmid. In the supercoiled plasmid, the stretch is in the Z-form, whereas it is in the B-form when the plasmid is relaxed. Frank strand breaks (FSB) and alkali-revealed breaks (ARB) were located and quantified using sequencing gel electrophoresis. We show that B- and Z-DNA have the same mean sensitivity towards radiolytic attack, for both FSB and ARB. Nevertheless, the guanine sites are more sensitive, and the cytosine sites less sensitive in Z- than in B-DNA, leading to a characteristic signature of the Z-form. The comparison of experiments with the outcome of a Monte Carlo simulation of OH. radical attack suggests that transfer of initial damage from a guanine base to its attached sugar or the adjacent 3' cytosine is more important in Z-DNA than in B-DNA.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Base Sequence
  • DNA / radiation effects*
  • DNA Damage / radiation effects*
  • Free Radicals
  • Hydroxides / chemistry
  • Molecular Sequence Data
  • Monte Carlo Method
  • Plasmids

Substances

  • Free Radicals
  • Hydroxides
  • DNA
  • hydroxide ion