The structure of Ascaris hemoglobin domain I at 2.2 A resolution: molecular features of oxygen avidity

Proc Natl Acad Sci U S A. 1995 May 9;92(10):4224-8. doi: 10.1073/pnas.92.10.4224.

Abstract

The perienteric hemoglobin of the parasitic nematode Ascaris has an exceptionally high affinity for oxygen. It is an octameric protein containing two similar heme-binding domains per subunit, but recombinant constructs expressing a single, monomeric heme-binding domain (domain 1; D1) retain full oxygen avidity. We have solved the crystal structure of D1 at 2.2 A resolution. Analysis of the structure reveals a characteristic globin fold and illuminates molecular features involved in oxygen avidity of Ascaris perienteric hemoglobin. A strong hydrogen bond between tyrosine at position 10 in the B helix (tyrosine-B10) and the distal oxygen of the ligand, combined with a weak hydrogen bond between glutamine-E7 and the proximal oxygen, grips the ligand in the binding pocket. A third hydrogen bond between these two amino acids appears to stabilize the structure. The B helix of D1 is displaced laterally by 2.5 A when compared with sperm whale myoglobin. This shifts the tyrosine-B10 hydroxyl far enough from liganded oxygen to form a strong hydrogen bond without steric hindrance. Changes in the F helix compared with myoglobin contribute to a tilted heme that may also be important for oxygen affinity.

Publication types

  • Comparative Study
  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Amino Acid Sequence
  • Animals
  • Ascaris / metabolism*
  • Binding Sites
  • Crystallization
  • Crystallography, X-Ray
  • Heme / metabolism
  • Hemoglobins / chemistry*
  • Hemoglobins / isolation & purification
  • Hemoglobins / metabolism
  • Histidine
  • Models, Molecular
  • Molecular Sequence Data
  • Myoglobin / chemistry
  • Oxygen
  • Oxyhemoglobins / chemistry*
  • Oxyhemoglobins / metabolism
  • Protein Structure, Secondary*
  • Recombinant Proteins / chemistry
  • Recombinant Proteins / isolation & purification
  • Recombinant Proteins / metabolism
  • Sequence Homology, Amino Acid
  • Software
  • Whales

Substances

  • Hemoglobins
  • Myoglobin
  • Oxyhemoglobins
  • Recombinant Proteins
  • Heme
  • Histidine
  • Oxygen