Detection of DNA mutations in acid formalin-fixed paraffin-embedded archival tumor specimens by polymerase chain reaction-single strand conformation polymorphism analysis

Cancer Detect Prev. 1995;19(3):278-81.

Abstract

A single strand conformation polymorphism analysis on polymerase chain reaction (PCR)-amplified genomic DNA was used for the detection of DNA mutations in acid formalin-fixed, paraffin-embedded tissues. Fifty non-small cell lung cancers were screened for mutations in the exon 5 of the p53 tumor suppressor gene. Structural abnormalities of the gene were found in nine (18%) of the tumors examined. The results show that paraffin-embedded tissues fixed in unbuffered formalin can be a good source of DNA for a mobility shift analysis by neutral polyacrylamide gel electrophoresis. The described procedure allows retrospective genetic studies on paraffin blocks available in all pathology departments.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Base Sequence
  • Carcinoma, Non-Small-Cell Lung / genetics*
  • DNA / analysis*
  • DNA / drug effects
  • Fixatives
  • Formaldehyde
  • Genes, p53 / genetics
  • Humans
  • Lung Neoplasms / genetics*
  • Molecular Sequence Data
  • Mutation / genetics*
  • Paraffin Embedding / methods*
  • Polymerase Chain Reaction / methods*
  • Polymorphism, Single-Stranded Conformational*
  • Retrospective Studies
  • Tissue Fixation / methods

Substances

  • Fixatives
  • Formaldehyde
  • DNA