Demonstration of the indolepyruvate decarboxylase gene homologue in different auxin-producing species of the Enterobacteriaceae

Can J Microbiol. 1994 Dec;40(12):1072-6. doi: 10.1139/m94-170.

Abstract

Different Enterobacteriaceae were assayed for their ability to produce the plant hormone indole-3-acetate with the aim to study the distribution of the indole-3-pyruvate pathway, which is known to be involved in the production of indole-3-acetate in a root-associated Enterobacter cloacae strain. Other E. cloacae strains, and also Enterobacter agglomerans strains, Pantoea agglomerans, Klebsiella aerogenes, and Klebsiella oxytoca were found to convert tryptophan into indole-3-acetate. As it was also intended to identify the conserved regions of the indole-3-pyruvate decarboxylase, which is involved in producing indole-3-acetate in the E. cloacae strain, oligonucleotide primers were synthesized for different regions of the corresponding gene. One pair of these primers allowed us to amplify a segment of the predicted size by the polymerase chain reaction with DNA of the seven different Enterobacteriaceae that produce indole-3-acetate. Segments of five strains were cloned and sequenced. All sequences showed significant homology to the indole-3-pyruvate decarboxylase gene. As in addition a positive DNA-DNA hybridization signal was detected in the seven strains using the E. cloacae or E. agglomerans segments as a probe, indole-3-acetate biosynthesis is suggested to be catalyzed via the indole-3-pyruvate pathway not only in E. cloacae but also in the other soil-living Enterobacteriaceae. Conserved regions were detected in the indole-3-decarboxylase by alignment of the now-available five different partial sequences. These regions should enable identification of the gene in other bacterial families or even in plants.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Base Sequence
  • Carboxy-Lyases / genetics*
  • DNA Primers
  • Enterobacteriaceae / enzymology
  • Enterobacteriaceae / genetics*
  • Genes, Bacterial
  • Indoleacetic Acids / biosynthesis*
  • Indoleacetic Acids / genetics
  • Molecular Sequence Data
  • Sequence Alignment

Substances

  • DNA Primers
  • Indoleacetic Acids
  • indolepyruvate decarboxylase
  • Carboxy-Lyases

Associated data

  • GENBANK/X04675
  • GENBANK/X80713
  • GENBANK/X80714
  • GENBANK/X80715
  • GENBANK/X80716
  • GENBANK/X80717