Diversified sequences of peptide epitope for same-RNA recognition

Proc Natl Acad Sci U S A. 1993 Nov 1;90(21):10046-50. doi: 10.1073/pnas.90.21.10046.

Abstract

We replaced an essential RNA-binding, 30-amino acid helix-loop in an Escherichia coli tRNA synthetase with an inactive and simplified "generic" sequence having 23 of the 30 amino acids as alanine and serine. Wild-type residues were restored in random combinations to generate a library with a sequence complexity of about 1.9 x 10(7). Active molecules were obtained by genetic selection at a frequency of approximately 1% and contained variants with as many as 11 alanine/serine replacements and a total of 17 alanine/serine residues. These variants have activities which are thermodynamically competitive with that of the native protein and therefore are functionally and, most likely, conformationally equivalent.

Publication types

  • Comparative Study
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Anticodon / metabolism
  • Binding Sites
  • Calorimetry
  • Epitopes / chemistry
  • Escherichia coli / enzymology*
  • Escherichia coli / genetics
  • Genes, Bacterial
  • Genetic Variation
  • Geobacillus stearothermophilus / enzymology
  • Methionine-tRNA Ligase / chemistry*
  • Methionine-tRNA Ligase / genetics
  • Methionine-tRNA Ligase / metabolism*
  • Mutagenesis, Site-Directed
  • Point Mutation
  • Protein Structure, Secondary*
  • Saccharomyces cerevisiae / enzymology
  • Sequence Deletion
  • Sequence Homology, Amino Acid
  • Thermus thermophilus / enzymology

Substances

  • Anticodon
  • Epitopes
  • Methionine-tRNA Ligase