1H and 15N assignments and secondary structure of the PI3K SH3 domain

FEBS Lett. 1993 Jun 7;324(1):93-8. doi: 10.1016/0014-5793(93)81539-c.

Abstract

The sequential 1H and 15N assignments of the SH3 domain of human phosphatidyl inositol 3'-kinase (PI3K) were determined by a combination of homonuclear and heteronuclear NMR experiments. With the exception of several protons belonging to lysine and proline residues, all proton and proton-bearing amide nitrogen resonances were assigned. Based on the sequential nuclear Overhauser effects (NOEs), 3JNH-C alpha H coupling constants and locations of slowly exchanging amide protons, we determined that the secondary structures of the protein consists of six beta-strands, two beta-turns and four short helices. Additional long range NOEs indicate that these beta-strands form two antiparallel beta-sheets. The topology of secondary structural elements of the PI3K SH3 domain is similar to those of the SH3 domains from c-Src and alpha-spectrin, suggesting that the SH3 family has a common tertiary structural motif.

Publication types

  • Comparative Study
  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Amino Acid Sequence
  • Genes, src*
  • Humans
  • Hydrogen
  • Magnetic Resonance Spectroscopy / methods
  • Models, Molecular
  • Molecular Sequence Data
  • Nitrogen Isotopes
  • Phosphatidylinositol 3-Kinases
  • Phosphotransferases / chemistry*
  • Phosphotransferases / genetics
  • Protein Structure, Secondary*
  • Proto-Oncogene Proteins pp60(c-src) / chemistry*
  • Proto-Oncogene Proteins pp60(c-src) / genetics
  • Sequence Homology, Amino Acid
  • Spectrin / chemistry

Substances

  • Nitrogen Isotopes
  • Spectrin
  • Hydrogen
  • Phosphotransferases
  • Phosphatidylinositol 3-Kinases
  • Proto-Oncogene Proteins pp60(c-src)