Interaction of the 47-kDa talin fragment and the 32-kDa vinculin fragment with acidic phospholipids: a computer analysis

Biophys J. 1995 Jul;69(1):228-41. doi: 10.1016/S0006-3495(95)79894-0.

Abstract

In recent in vitro experiments, it has been demonstrated that the 47-kDa fragment of the talin molecule and the 32-kDa fragment of the vinculin molecule interact with acidic phospholipids. By using a computer analysis method, we determined the hydrophobic and amphipathic stretches of these fragments and, by applying a purpose-written matrix method, we ascertained the molecular amphipathic structure of alpha-helices. Calculations for the 47-kDa mouse talin fragment (residues 1-433; NH2-terminal region) suggest specific interactions of residues 21-39, 287-342, and 385-406 with acidic phospholipids and a general lipid-binding domain for mouse talin (primary amino acid sequence 385-401) and for Dictyostelium talin (primary amino acid sequence 348-364). Calculations for the 32-kDa chicken embryo vinculin fragment (residues 858-1066; COOH-terminal region) and from nematode vinculin alignment indicate for chicken embryo vinculin residues 935-978 and 1020-1040 interactions with acidic phospholipids. Experimental confirmation has been given for vinculin (residues 916-970), and future detailed experimental analyses are now needed to support the remaining computational data.

Publication types

  • Comparative Study
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Animals
  • Binding Sites
  • Chickens
  • Mice
  • Molecular Sequence Data
  • Molecular Weight
  • Nematoda
  • Peptide Fragments / chemistry*
  • Peptide Fragments / metabolism
  • Phospholipids / chemistry
  • Phospholipids / metabolism*
  • Protein Binding
  • Protein Structure, Secondary*
  • Sequence Homology, Amino Acid
  • Software
  • Talin / chemistry*
  • Talin / metabolism
  • Vinculin / chemistry*
  • Vinculin / metabolism

Substances

  • Peptide Fragments
  • Phospholipids
  • Talin
  • Vinculin