Interactions responsible for the pH dependence of the beta-hairpin conformational population formed by a designed linear peptide

Eur J Biochem. 1995 Oct 1;233(1):283-92. doi: 10.1111/j.1432-1033.1995.283_1.x.

Abstract

In a previous work [Blanco, F.J., Jiménez, M.A., Herranz, J., Rico, M., Santoro, J. & Nieto, J. L. (1993) J. Am. Chem. Soc. 115, 5887-5888] we showed that a short, designed linear peptide, YQNPDGSQA (peptide 1), can form a monomeric beta hairpin in aqueous solution. The pH dependence of the beta-hairpin conformation formed by the designed peptide and a series of related peptides has been examined in this work using 1H-NMR methods. Three pH-dependent interactions have been identified: a local interaction, unimportant structurally, between the C-terminal carboxylate group and the side-chain amide group of Q8; an electrostatic interaction between the main-chain N-terminus and C-terminus; and a hydrogen bond involving the side-chain amide protons of N3 and the side-chain carboxylate group of D5. The latter two interactions are particularly relevant as they increase the population of the beta-hairpin conformation. We also observe in the mutant peptide A9H that the interaction between Y1 and H9 (of the type proposed to exist in proteins) does not contribute to beta-hairpin stabilisation in our peptide system. Peptide 1 is, therefore, a very suitable model to examine the different interactions that contribute to beta-hairpin stability.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Drug Design
  • Drug Stability
  • Hydrogen-Ion Concentration
  • Magnetic Resonance Spectroscopy
  • Models, Chemical
  • Molecular Sequence Data
  • Oligopeptides / chemistry*
  • Protein Conformation
  • Protein Structure, Secondary
  • Protons
  • Temperature

Substances

  • Oligopeptides
  • Protons