Cloning and nucleotide sequence of the simian rotavirus gene 6 that codes for the major inner capsid protein

Nucleic Acids Res. 1984 Feb 24;12(4):1875-87. doi: 10.1093/nar/12.4.1875.

Abstract

The nucleotide sequence of the gene that codes for the major inner capsid protein of the simian rotavirus SA11 has been determined. A DNA copy of mRNA from gene 6 was cloned in the E. coli plasmid pBR322. The full-length gene is 1357 nucleotides long with a 5'-noncoding region of 23 nucleotides and a 3'-noncoding region of 140 nucleotides. The gene contains a single, long, open reading-frame of 1194 nucleotides capable of coding for a protein of 397 amino acids with a molecular weight of 44,816. The predicted protein product is relatively proline-rich with a net charge at neutral pH of -3.5. One stretch of 53 amino acids (encoded by nucleotides 327-485) is basic.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Base Sequence
  • Capsid / genetics*
  • Capsid / isolation & purification
  • Cloning, Molecular*
  • Escherichia coli / genetics
  • Genes*
  • Genes, Viral*
  • Molecular Weight
  • Plasmids
  • RNA, Messenger / genetics
  • Rotavirus / genetics*
  • Viral Proteins / genetics*
  • Viral Proteins / isolation & purification
  • Viral Structural Proteins

Substances

  • RNA, Messenger
  • Viral Proteins
  • Viral Structural Proteins

Associated data

  • GENBANK/X00421