A family of small nucleoplasmic RNAs with common structural features

Biol Cell. 1984;51(1):1-9. doi: 10.1111/j.1768-322x.1984.tb00278.x.

Abstract

The four small nucleoplasmic RNAs designated as U1, U2, U4 and U5 RNA have a common structural domain or domain A. It is characterized by the presence of consensus sequence Pu-A-(U)5-G-Pup in a free single-stranded region and of the sequence Py-N-Py-Gp in the top loop of a hairpin located at the 3' end of the free region. Domain A is likely to be involved in a function common to the four small RNAs. Other domains possibly involved in the specific function of U1 and U5 RNAs are also presented. Several molecular forms of a same U RNA may be found in a same cellular type. These variant U RNAs are particularly numerous for U5 RNA. The possible origin of such new molecular forms is discussed in relation to multigene families for U RNAs. U1, U2, U4 and U5 RNAs are capped (with trimethylguanosine) and the consensus sequence for their 6 first nucleotides is A-(Py)5p. Thus, their 5' end resembles that of premessenger RNA, also capped (with monomethylguanosine) and bearing A-(Py)5p. Both classes of RNA are synthesized by RNA polymerase B, but the presence of a "TATA box" upstream of the capsite has not yet been demonstrated for U RNA genes. U1, U2, U4 and U5 RNAs bear a sequence C-Py-Pu at their 3' end or very close to it. This trinucleotide might be part of a site of post-transcriptional cleavage of U RNA precursors.(ABSTRACT TRUNCATED AT 250 WORDS)

Publication types

  • Comparative Study
  • Research Support, Non-U.S. Gov't
  • Review

MeSH terms

  • Animals
  • Base Sequence
  • Chickens / genetics
  • Drosophila / genetics
  • Heterogeneous-Nuclear Ribonucleoproteins
  • Humans
  • Mice / genetics
  • Nucleic Acid Conformation
  • RNA / analysis*
  • RNA / genetics
  • RNA / physiology
  • RNA Caps / analysis
  • RNA Splicing
  • RNA, Small Nuclear
  • Rats / genetics
  • Ribonucleoproteins / physiology
  • Ribonucleoproteins, Small Nuclear
  • Species Specificity
  • Transcription, Genetic
  • Xenopus / genetics

Substances

  • Heterogeneous-Nuclear Ribonucleoproteins
  • RNA Caps
  • RNA, Small Nuclear
  • Ribonucleoproteins
  • Ribonucleoproteins, Small Nuclear
  • RNA