3D-QSAR-Directed Synthesis of Halogenated Coumarin-3-Hydrazide Derivatives: Unveiling Their Potential as SDHI Antifungal Agents

J Agric Food Chem. 2024 May 29;72(21):11938-11948. doi: 10.1021/acs.jafc.4c00200. Epub 2024 May 16.

Abstract

The pursuit of new succinate dehydrogenase (SDH) inhibitors is a leading edge in fungicide research and development. The use of 3D quantitative structure-activity relationship (3D-QSAR) models significantly enhances the development of compounds with potent antifungal properties. In this study, we leveraged the natural product coumarin as a molecular scaffold to synthesize 74 novel 3-coumarin hydrazide derivatives. Notably, compounds 4ap (0.28 μg/mL), 6ae (0.32 μg/mL), and 6ah (0.48 μg/mL) exhibited exceptional in vitro effectiveness against Rhizoctonia solani, outperforming the commonly used fungicide boscalid (0.52 μg/mL). Furthermore, compounds 4ak (0.88 μg/mL), 6ae (0.61 μg/mL), 6ah (0.65 μg/mL), and 6ak (1.11 μg/mL) showed significant activity against Colletotrichum orbiculare, surpassing both the SDHI fungicide boscalid (43.45 μg/mL) and the broad-spectrum fungicide carbendazim (2.15 μg/mL). Molecular docking studies and SDH enzyme assays indicate that compound 4ah may serve as a promising SDHI fungicide. Our ongoing research aims to refine this 3D-QSAR model further, enhance molecular design, and conduct additional bioactivity assays.

Keywords: 3D-QSAR; SDHIs; antifungal activity; coumarin hydrazide; molecular docking.

MeSH terms

  • Antifungal Agents / chemical synthesis
  • Antifungal Agents / chemistry
  • Antifungal Agents / pharmacology
  • Colletotrichum / drug effects
  • Coumarins* / chemical synthesis
  • Coumarins* / chemistry
  • Coumarins* / pharmacology
  • Enzyme Inhibitors / chemical synthesis
  • Enzyme Inhibitors / chemistry
  • Enzyme Inhibitors / pharmacology
  • Fungal Proteins / antagonists & inhibitors
  • Fungal Proteins / chemistry
  • Fungal Proteins / metabolism
  • Fungicides, Industrial* / chemical synthesis
  • Fungicides, Industrial* / chemistry
  • Fungicides, Industrial* / pharmacology
  • Halogenation
  • Hydrazines / chemical synthesis
  • Hydrazines / chemistry
  • Hydrazines / pharmacology
  • Molecular Docking Simulation
  • Molecular Structure
  • Quantitative Structure-Activity Relationship*
  • Rhizoctonia* / drug effects
  • Succinate Dehydrogenase* / antagonists & inhibitors
  • Succinate Dehydrogenase* / metabolism

Substances

  • Coumarins
  • Fungicides, Industrial
  • Succinate Dehydrogenase
  • coumarin
  • Enzyme Inhibitors
  • Fungal Proteins
  • Hydrazines
  • Antifungal Agents

Supplementary concepts

  • Rhizoctonia solani