Fungal diversity in sediments of the eastern tropical Pacific oxygen minimum zone revealed by metabarcoding

PLoS One. 2024 May 13;19(5):e0301605. doi: 10.1371/journal.pone.0301605. eCollection 2024.

Abstract

Oxygen minimum zones (OMZ) represent ~8% of the ocean, with the Pacific as the largest and top expanding area. These regions influence marine ecosystems, promoting anaerobic microbial communities. Nevertheless, only a fraction of microbial diversity has been studied, with fungi being the less explored component. So, herein we analyzed fungal diversity patterns in surface and subsurface sediments along a bathymetric transect using metabarcoding of the ITS1 region in the OMZ of the Mexican Pacific off Mazatlán. We identified 353 amplicon sequence variants (ASV), within the Ascomycota, Basidiomycota, and Rozellomycota. Spatial patterns evidenced higher alpha diversity in nearshore and subsurface subsamples, probably due to temporal fluctuations in organic matter inputs. Small-scale heterogeneity characterized the community with the majority of ASV (269 ASV) occurring in a single subsample, hinting at the influence of local biogeochemical conditions. This baseline data evidenced a remarkable fungal diversity presenting high variation along a bathymetric and vertical transects.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Biodiversity*
  • DNA Barcoding, Taxonomic*
  • Fungi* / classification
  • Fungi* / genetics
  • Fungi* / isolation & purification
  • Geologic Sediments* / microbiology
  • Oxygen* / analysis
  • Oxygen* / metabolism
  • Pacific Ocean
  • Phylogeny

Substances

  • Oxygen

Grants and funding

This research was supported by the Programa de Apoyo a Proyectos de Investigación e Innovación Tecnológica, Dirección General de Asuntos del Personal Académico, Universidad Nacional Autónoma de México (UNAM) (grant number IN200921) to PV; as well as by the Ciencia de Frontera program, Consejo Nacional de Humanidades, Ciencias, y Tecnologías (grant number 2019-2266) to SP. The ship time costs were funded by the UNAM. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.