Exploring long-range fluorine-carbon J-coupling for conformational analysis of deoxyfluorinated disaccharides: A combined computational and NMR study

Bioorg Chem. 2024 Jun:147:107388. doi: 10.1016/j.bioorg.2024.107388. Epub 2024 Apr 21.

Abstract

In this study, we investigated the potential of long-range fluorine-carbon J-coupling for determining the structures of deoxyfluorinated disaccharides. Three disaccharides, previously synthesized as potential galectin inhibitors, exhibited through-space fluorine-carbon J-couplings. In our independent conformational analysis of these disaccharide derivatives, we employed a combination of density functional theory (DFT) calculations and nuclear magnetic resonance (NMR) experiments. By comparing the calculated nuclear shieldings with the experimental carbon chemical shifts, we were able to identify the most probable conformers for each compound. A model comprising fluoromethane and methane molecules was used to study the relationship between molecular arrangements and intermolecular through-space J-coupling. Our study demonstrates the important effect of internuclear distance and molecular orientation on the magnitude of fluorine-carbon coupling. The experimental values for the fluorine-carbon through-space couplings (TSCs) of the disaccharides corresponded with values calculated for the most probable conformers identified by the conformational analysis. These results unlock the broader application of fluorine-carbon TSCs as powerful tools for conformational analysis of flexible molecules, offering valuable insights for future structural investigations.

Keywords: Conformation; DFT calculations; Fluorine; NMR spectroscopy; Saccharides.

MeSH terms

  • Carbohydrate Conformation
  • Carbon / chemistry
  • Density Functional Theory*
  • Disaccharides* / chemistry
  • Fluorine* / chemistry
  • Magnetic Resonance Spectroscopy*
  • Molecular Conformation