High-Throughput Sequencing Reveals Three Rhabdoviruses Persisting in the IRE/CTVM19 Cell Line

Viruses. 2024 Apr 9;16(4):576. doi: 10.3390/v16040576.

Abstract

Cell cultures derived from ticks have become a commonly used tool for the isolation and study of tick-borne pathogens and tick biology. The IRE/CTVM19 cell line, originating from embryos of Ixodes ricinus, is one such line. Previously, reovirus-like particles, as well as sequences with similarity to rhabdoviruses and iflaviruses, were detected in the IRE/CTVM19 cell line, suggesting the presence of multiple persisting viruses. Subsequently, the full genome of an IRE/CTVM19-associated rhabdovirus was recovered from a cell culture during the isolation of the Alongshan virus. In the current work, we used high-throughput sequencing to describe a virome of the IRE/CTVM19 cell line. In addition to the previously detected IRE/CTVM19-associated rhabdovirus, two rhabdoviruses were detected: Chimay rhabdovirus and Norway mononegavirus 1. In the follow-up experiments, we were able to detect both positive and negative RNA strands of the IRE/CTVM19-associated rhabdovirus and Norway mononegavirus 1 in the IRE/CTVM19 cells, suggesting their active replication in the cell line. Passaging attempts in cell lines of mammalian origin failed for all three discovered rhabdoviruses.

Keywords: Chimay rhabdovirus; IRE/CTVM19; IRE/CTVM19-associated rhabdovirus; Norway mononegavirus 1; Rhabdoviridae; endogenous virus; persistence; tick cell line.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Cell Line
  • Genome, Viral*
  • High-Throughput Nucleotide Sequencing*
  • Phylogeny
  • RNA, Viral / genetics
  • Rhabdoviridae Infections / veterinary
  • Rhabdoviridae Infections / virology
  • Rhabdoviridae* / classification
  • Rhabdoviridae* / genetics
  • Rhabdoviridae* / isolation & purification
  • Virome / genetics
  • Virus Replication

Substances

  • RNA, Viral