Catalytic specificity and crystal structure of cystathionine γ-lyase from Pseudomonas aeruginosa

Sci Rep. 2024 Apr 23;14(1):9364. doi: 10.1038/s41598-024-57625-7.

Abstract

The escalating drug resistance among microorganisms underscores the urgent need for innovative therapeutic strategies and a comprehensive understanding of bacteria's defense mechanisms against oxidative stress and antibiotics. Among the recently discovered barriers, the endogenous production of hydrogen sulfide (H2S) via the reverse transsulfuration pathway, emerges as a noteworthy factor. In this study, we have explored the catalytic capabilities and crystal structure of cystathionine γ-lyase from Pseudomonas aeruginosa (PaCGL), a multidrug-opportunistic pathogen chiefly responsible for nosocomial infections. In addition to a canonical L-cystathionine hydrolysis, PaCGL efficiently catalyzes the production of H2S using L-cysteine and/or L-homocysteine as alternative substrates. Comparative analysis with the human enzyme and counterparts from other pathogens revealed distinct structural features within the primary enzyme cavities. Specifically, a distinctly folded entrance loop could potentially modulate the access of substrates and/or inhibitors to the catalytic site. Our findings offer significant insights into the structural evolution of CGL enzymes across different pathogens and provide novel opportunities for developing specific inhibitors targeting PaCGL.

Keywords: Pseudomonas aeruginosa; Catalytic specificity; Crystal structure; Cystathionine γ-lyase; Hydrogen sulfide; Multidrug resistant bacteria.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bacterial Proteins / chemistry
  • Bacterial Proteins / metabolism
  • Catalysis
  • Catalytic Domain*
  • Crystallography, X-Ray
  • Cystathionine gamma-Lyase* / chemistry
  • Cystathionine gamma-Lyase* / metabolism
  • Cysteine / chemistry
  • Cysteine / metabolism
  • Homocysteine / chemistry
  • Homocysteine / metabolism
  • Humans
  • Hydrogen Sulfide* / chemistry
  • Hydrogen Sulfide* / metabolism
  • Models, Molecular
  • Protein Conformation
  • Pseudomonas aeruginosa* / enzymology
  • Substrate Specificity

Substances

  • Cystathionine gamma-Lyase
  • Hydrogen Sulfide
  • Cysteine
  • Bacterial Proteins
  • Homocysteine