Solution NMR chemical shift assignment of apo and molybdate-bound ModA at two pHs

Biomol NMR Assign. 2024 Jun;18(1):93-98. doi: 10.1007/s12104-024-10173-7. Epub 2024 Apr 20.

Abstract

ModA is a soluble periplasmic molybdate-binding protein found in most gram-negative bacteria. It is part of the ABC transporter complex ModABC that moves molybdenum into the cytoplasm, to be used by enzymes that carry out various redox reactions. Since there is no clear analog for ModA in humans, this protein could be a good target for antibacterial drug design. Backbone 1H, 13C and 15N chemical shifts of apo and molybdate-bound ModA from E. coli were assigned at pHs 6.0 and 4.5. In addition, side chain atoms were assigned for apo ModA at pH 6.0. When comparing apo and molybdate-bound ModA at pH 6.0, large chemical shift perturbations are observed, not only in areas near the bound metal, but also in regions that are distant from the metal-binding site. Given the significant conformational change between apo and holo ModA, we might expect the large chemical shift changes to be more widespread; however, since they are limited to specific regions, the residues with large perturbations may reveal allosteric sites that could ultimately be important for the design of antibiotics that target ModA.

Keywords: Chemical shift assignment; ModA; Molybdate; Molybdenum; NMR.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Apoproteins* / chemistry
  • Apoproteins* / metabolism
  • Escherichia coli
  • Escherichia coli Proteins / chemistry
  • Escherichia coli Proteins / metabolism
  • Hydrogen-Ion Concentration
  • Molybdenum* / chemistry
  • Nuclear Magnetic Resonance, Biomolecular*
  • Solutions

Substances

  • Molybdenum
  • molybdate
  • Apoproteins
  • Escherichia coli Proteins
  • Solutions