A prognostic risk model based on lactate metabolism and transport-related lncRNAs for gastric adenocarcinoma

Biomarkers. 2024 Jun;29(4):211-221. doi: 10.1080/1354750X.2024.2341411. Epub 2024 Apr 17.

Abstract

Background: Increased lactate levels and metastasis in tumours are strongly associated with dismal outcomes. But prognostic value of lactate metabolism and transport-related lncRNAs in gastric adenocarcinoma (GA) patients remains unaddressed.

Methods: Gene expression data of GA were provided by The Cancer Genome Atlas. Lactate metabolism and transport-related gene data were accessed from GSEA. LncRNAs related to lactate metabolism and transport were identified by correlation analysis. A prognostic model was built by regression analysis. Validity of prognostic model was confirmed through survival analysis and receiver operating characteristic (ROC) curve. Immunity of each risk group was evaluated by immune correlation analysis .LncRNA-mRNA network was built by correlation analysis using Cytoscape software.

Results: A 12-gene prognostic model based on lactate metabolism and transport-related lncRNAs was built in GA. Median riskscore was utilized to classify GA samples into high- and low-risk groups. Survival analysis and ROC curves demonstrated validity of prognostic model. Most immune checkpoint molecules and TIDE scores were lower in the low-risk group. LINC01303 and LINC01545 may be the key prognostic factors in patients with GA.

Conclusion: This study successfully built a prognostic model of lactate metabolism and transport-related lncRNAs in GA. The findings guide prognostic management of GA patients.

Keywords: Gastric adenocarcinoma; immune analysis; lactate metabolism and transport; lncRNA; prognosis.

MeSH terms

  • Adenocarcinoma* / genetics
  • Adenocarcinoma* / mortality
  • Adenocarcinoma* / pathology
  • Biomarkers, Tumor / genetics
  • Female
  • Gene Expression Regulation, Neoplastic
  • Humans
  • Lactic Acid* / metabolism
  • Male
  • Prognosis
  • RNA, Long Noncoding* / genetics
  • ROC Curve
  • Stomach Neoplasms* / genetics
  • Stomach Neoplasms* / mortality
  • Stomach Neoplasms* / pathology
  • Survival Analysis