Genome-wide identification and characterization of the sweet orange (Citrus sinensis) basic helix-loop-helix (bHLH) family reveals a role for CsbHLH085 as a regulator of citrus bacterial canker resistance

Int J Biol Macromol. 2024 May;267(Pt 2):131442. doi: 10.1016/j.ijbiomac.2024.131442. Epub 2024 Apr 16.

Abstract

Citrus bacterial canker (CBC) is a harmful bacterial disease caused by Xanthomonas citri subsp. citri (Xcc), negatively impacting citrus production worldwide. The basic helix-loop-helix (bHLH) transcription factor family plays crucial roles in plant development and stress responses. This study aimed to identify and annotate bHLH proteins encoded in the Citrus sinensis genome and explore their involvement and functional importance in regulating CBC resistance. A total of 135 putative CsbHLHs TFs were identified and categorized into 16 subfamilies. Their chromosomal locations, collinearity, and phylogenetic relationships were comprehensively analyzed. Upon Xcc strain YN1 infection, certain CsbHLHs were differentially regulated in CBC-resistant and CBC-sensitive citrus varieties. Among these, CsbHLH085 was selected for further functional characterization. CsbHLH085 was upregulated in the CBC-resistant citrus variety, was localized in the nucleus, and had a transcriptional activation activity. CsbHLH085 overexpression in Citrus significantly enhanced CBC resistance, accompanied by increased levels of salicylic acid (SA), jasmonic acid (JA), reactive oxygen species (ROS), and decreased levels of abscisic acid (ABA) and antioxidant enzymes. Conversely, CsbHLH085 virus-induced gene silencing resulted in opposite phenotypic and biochemical responses. CsbHLH085 silencing also affected the expression of phytohormone biosynthesis and signaling genes involved in SA, JA, and ABA signaling. These findings highlight the crucial role of CsbHLH085 in regulating CBC resistance, suggesting its potential as a target for biotechnological-assisted breeding citrus varieties with improved resistance against phytopathogens.

Keywords: Abscisic acid (ABA); Basic helix-loop-helix transcription factor (bHLH TF); Citrus bacterial canker (CBC); Jasmonic acid (JA); Reactive oxygen species (ROS); Salicylic acid (SA); Xanthomonas citri subsp. citri (Xcc).

MeSH terms

  • Basic Helix-Loop-Helix Transcription Factors* / genetics
  • Basic Helix-Loop-Helix Transcription Factors* / metabolism
  • Citrus sinensis* / genetics
  • Citrus sinensis* / microbiology
  • Cyclopentanes / metabolism
  • Disease Resistance* / genetics
  • Gene Expression Regulation, Plant*
  • Genome, Plant
  • Multigene Family
  • Oxylipins / metabolism
  • Phylogeny
  • Plant Diseases* / genetics
  • Plant Diseases* / microbiology
  • Plant Proteins* / genetics
  • Plant Proteins* / metabolism
  • Salicylic Acid / metabolism
  • Xanthomonas* / pathogenicity

Substances

  • Plant Proteins
  • Basic Helix-Loop-Helix Transcription Factors
  • Oxylipins
  • Cyclopentanes
  • Salicylic Acid
  • jasmonic acid

Supplementary concepts

  • Xanthomonas citri