Digital transformation of droplet/aerosol infection risk assessment realized on "Fugaku" for the fight against COVID-19

Int J High Perform Comput Appl. 2022 Nov;36(5-6):568-586. doi: 10.1177/10943420221116056.

Abstract

The fastest supercomputer in 2020, Fugaku, has not only achieved digital transformation of epidemiology in allowing end-to-end, detailed quantitative modeling of COVID-19 transmissions for the first time but also transformed the behavior of the entire Japanese public through its detailed analysis of transmission risks in multitudes of societal situations entailing heavy risks. A novel aerosol simulation methodology was synthesized out of a combination of a new CFD methods meeting industrial demands in the solver, CUBE (Jansson et al., 2019), which not only allowed the simulations to scale massively with high resolution required for micrometer virus-containing aerosol particles but also enabled extremely rapid time-to-solution due to its ability to generate the digital twins representing multitudes of societal situations in a matter of minutes, attaining true overall application high performance; such simulations have been running for the past 1.5°years on Fugaku, cumulatively consuming top supercomputer-class resources and the communicated by the media as well as becoming the basis for official public policies.

Keywords: COVID-19; building cube method; computational fluid dynamics; dirty CAD; droplet/aerosol transmission; immersed boundary method; societal behavioral change.