Fully in vitro iterative construction of a 24 kb-long artificial DNA sequence to store digital information

Biotechniques. 2024 May;76(5):203-215. doi: 10.2144/btn-2023-0109. Epub 2024 Apr 4.

Abstract

In the absence of a DNA template, the ab initio production of long double-stranded DNA molecules of predefined sequences is particularly challenging. The DNA synthesis step remains a bottleneck for many applications such as functional assessment of ancestral genes, analysis of alternative splicing or DNA-based data storage. In this report we propose a fully in vitro protocol to generate very long double-stranded DNA molecules starting from commercially available short DNA blocks in less than 3 days using Golden Gate assembly. This innovative application allowed us to streamline the process to produce a 24 kb-long DNA molecule storing part of the Declaration of the Rights of Man and of the Citizen of 1789 . The DNA molecule produced can be readily cloned into a suitable host/vector system for amplification and selection.

Keywords: DNA assembly; DNA storage; Oxford nanopore technology; long read sequencing; synthetic DNA.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Base Sequence / genetics
  • Cloning, Molecular / methods
  • DNA* / chemistry
  • DNA* / genetics
  • Humans
  • Information Storage and Retrieval / methods

Substances

  • DNA