Coral reefs in transition: Temporal photoquadrat analyses and validation of underwater hyperspectral imaging for resource-efficient monitoring in Guam

Matthew S Mills; Mischa Ungermann; Guy Rigot; Joost den Haan; Javier X Leon; Tom Schils

doi:10.1371/journal.pone.0299523

Coral reefs in transition: Temporal photoquadrat analyses and validation of underwater hyperspectral imaging for resource-efficient monitoring in Guam

PLoS One. 2024 Mar 19;19(3):e0299523. doi: 10.1371/journal.pone.0299523. eCollection 2024.

Authors

Matthew S Mills^{1

2}, Mischa Ungermann³, Guy Rigot³, Joost den Haan³, Javier X Leon², Tom Schils¹

Affiliations

¹ Marine Laboratory, University of Guam, Mangilao, Guam.
² School of Science, Technology, and Engineering, University of the Sunshine Coast, Sippy Downs, Queensland, Australia.
³ PlanBlue GmbH, Bremen, Germany.

Abstract

The island of Guam in the west Pacific has seen a significant decrease in coral cover since 2013. Lafac Bay, a marine protected area in northeast Guam, served as a reference site for benthic communities typical of forereefs on the windward side of the island. The staghorn coral Acropora abrotanoides is a dominant and characteristic ecosystem engineer of forereef communities on exposed shorelines. Photoquadrat surveys were conducted in 2015, 2017, and 2019, and a diver-operated hyperspectral imager (i.e., DiveRay) was used to survey the same transects in 2019. Machine learning algorithms were used to develop an automated pipeline to assess the benthic cover of 10 biotic and abiotic categories in 2019 based on hyperspectral imagery. The cover of scleractinian corals did not differ between 2015 and 2017 despite being subjected to a series of environmental disturbances in these years. Surveys in 2019 documented the almost complete decline of the habitat-defining staghorn coral Acropora abrotanoides (a practically complete disappearance from about 10% cover), a significant decrease (~75%) in the cover of other scleractinian corals, and a significant increase (~55%) in the combined cover of bare substrate, turf algae, and cyanobacteria. The drastic change in community composition suggests that the reef at Lafac Bay is transitioning to a turf algae-dominated community. However, the capacity of this reef to recover from previous disturbances suggests that this transition could be reversed, making Lafac Bay an excellent candidate for long-term monitoring. Community analyses showed no significant difference between automatically classified benthic cover estimates derived from the hyperspectral scans in 2019 and those derived from photoquadrats. These findings suggest that underwater hyperspectral imagers can be efficient and effective tools for fast, frequent, and accurate monitoring of dynamic reef communities.

Copyright: © 2024 Mills et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

MeSH terms

Animals
Anthozoa*
Coral Reefs*
Ecosystem
Guam
Hyperspectral Imaging

Grants and funding

This research is based upon work supported by the National Aeronautics and Space Administration (NASA) and the National Science Foundation (NSF) under grant numbers 80NSSC17M0052 and OIA-1946352 awarded to Tom Schils and managed through the Guam EPSCoR offices of NASA and NSF. The work for this paper was also partly funded as an award to Matthew S. Mills by a HDR Support Grant provided by the University of the Sunshine Coast. Any opinions, findings, and conclusions or recommendations expressed in this manuscript are those of the authors and do not necessarily reflect the views of NASA, NSF, or any of their subagencies. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript. There was no additional funding received for this study.